Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3275 ATGACAGACGCTGCCGCTGAAGACGCCGCAAAACGCCGTAGTGCTGCGGCGGCGTACCAGAAGAAGCTCCTTCAACACAAGGAATTGGAATCCCGAGTACGATCAGTGAGGGAGAATTTGCGAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGACTTGAAGTCTCTTCAGAGCGTTGGACAGATCATTGGCGAAGTTCTCAGGCCTCTGGACAAAGAACGCTTGATTGTTAAAGCAAGCAGCGGGCCTAGGTATGTGGTTGGCTGCCGCAGTAAGGTAGACAAGGAAAAACTGACGTCCGGCACGCGAGTCGTTCTTGATATGACGACACTCACCATAATGCGAGCCCTTCCACGTGAAGTCGATCCAGTGGTTTACAGCATGTTGCATGAGGATCCTGGTAATGTTAGTTACTCCGCCGTTGGTGGTTTATCTGATCAGATAAGGGAATTGAGAGAATCAATTGAACTTCCTCTGATGAATCCTGAACTCTTTCTTCGAGTTGGAATTAAACCTCCTAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACCGGTAAAACATTGTTAGCTAGAGCAATTGCCAGTAATATAGATGCTAACTTCTTGAAGGTTGTCTCAAGTGCAATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTGGGTATGCCCGTGATCACCAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTTAGTGAGGGAACAAGTGCAGATCGTGAGATTCAAAGAACACTAATGGAGTTGCTAAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGGCCTGACGTACTGGACCCTGCTCTTCTGCGTCCAGGTAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCAAGGATGGAAATTCTGAAGATTCACGCTGCTGGGATTGCTAAGCATGGTGAAATAGATTATGAAGCTGTTGTTAAGCTTGCTGAGGGATTTAATGGGGCCGATCTTCGAAATGTCTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGAAAACTAAATGAGGCAAAGAAACTTGAATCCAGTGCTCACTACAATGCTGATTTTGGGAAAGACTAA 1203 0.4489 MTDAAAEDAAKRRSAAAAYQKKLLQHKELESRVRSVRENLRASKKEYNKTEDDLKSLQSVGQIIGEVLRPLDKERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYSMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3275 400 ProSitePatterns AAA-protein family signature. 280 298 IPR003960 GO:0005524|GO:0016887
Lja5g3275 400 Gene3D - 25 129 IPR012340 -
Lja5g3275 400 Coils Coil 19 60 - -
Lja5g3275 400 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 24 381 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lja5g3275 400 CDD AAA 143 310 - -
Lja5g3275 400 Pfam AAA+ lid domain 333 375 IPR041569 -
Lja5g3275 400 Pfam ATPase family associated with various cellular activities (AAA) 177 310 IPR003959 GO:0005524|GO:0016887
Lja5g3275 400 SMART AAA_5 173 312 IPR003593 -
Lja5g3275 400 Gene3D - 130 310 IPR027417 -
Lja5g3275 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 385 IPR027417 -
Lja5g3275 400 PANTHER BNAC02G30020D PROTEIN 7 396 - -
Lja5g3275 400 Pfam Proteasomal ATPase OB C-terminal domain 64 119 IPR032501 -
Lja5g3275 400 Gene3D - 311 381 - -
Lja5g3275 400 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 7 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3275 Lja-Chr5 63192124 63196188 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3275 5 63192124 63196188 Lja5g3275 5 63192124 63196188 ECH