LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g3271	ATGGCCTCATCCAGTGGAAACTCCAGCATTTCCACTAAGTTTCATAGCTCTGGCTCTGAAGAAGATTTGCAGCTTCTGATGGACCAGAGAAAGAGGAAGAGGAAGCAATCAAATTGCGAATCAGCGAGGAGATCTCGAATGCGAAAGCAGAAGCACTTTGATGATCTCAATGTCCAAGTGGAGAGGCTCACAAAGGAAAACAGTGAAATCCTCAATAGGGTGAATCTCATCACACAGCACTATGTGAATGTTGAGGCAGAGAATTGCATTTTGAGGGCCCAGATGGGTGAGCTTAGCCAAAGGCTTCAATCACTGAATGCTATCATCAGCCTCATCAACACAACCACTACAACTGGAATATGCCAAAATGATTGCTTTCTAACAATTGCTGATAACTTCATGAACCCCATGAACATGCACTATCTTAACCAACCAATTGTGGCCTCTGCAGAAGTTTTTCAGTGGTGA	468	0.438	MASSSGNSSISTKFHSSGSEEDLQLLMDQRKRKRKQSNCESARRSRMRKQKHFDDLNVQVERLTKENSEILNRVNLITQHYVNVEAENCILRAQMGELSQRLQSLNAIISLINTTTTTGICQNDCFLTIADNFMNPMNMHYLNQPIVASAEVFQW*	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g3271	155	Coils	Coil	53	73	-	-
	Lja5g3271	155	PANTHER	BZIP TRANSCRIPTION FACTOR	1	153	-	-
	Lja5g3271	155	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	33	48	IPR004827	GO:0003700\|GO:0006355
	Lja5g3271	155	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	28	87	IPR004827	GO:0003700\|GO:0006355
	Lja5g3271	155	MobiDBLite	consensus disorder prediction	24	53	-	-
	Lja5g3271	155	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lja5g3271	155	PANTHER	BZIP TRANSCRIPTION FACTOR 44	1	153	-	-
	Lja5g3271	155	SMART	brlzneu	26	90	IPR004827	GO:0003700\|GO:0006355
	Lja5g3271	155	SUPERFAMILY	Leucine zipper domain	30	82	IPR046347	GO:0003700\|GO:0006355
	Lja5g3271	155	MobiDBLite	consensus disorder prediction	1	53	-	-
	Lja5g3271	155	Gene3D	-	28	83	-	-
	Lja5g3271	155	Pfam	bZIP transcription factor	30	85	IPR004827	GO:0003700\|GO:0006355
	Lja5g3271	155	CDD	bZIP_plant_GBF1	31	81	IPR045314	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g3271	Lja-Chr5	63154568	63155986	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lja5g3271		bZIP_1	6.9e-10	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja5g3271	5	63154568	63155986	Lja5g3271	5	63154568	63155986	ECH