Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3268 ATGTCTGGACCGCTTGATCGCTTCGCTCTTCCCTGCTTTGAAGGATTCTCTGGTCATCATGATGAGAGGAGGGATCGGAGATCCGATTATGAAGTCTCTGAGGATGAAAGGCGAACGAGAATTGGAAGCCTGAAGAAGAAAGCGATCAATGCGTCGAGCAAGTTCAGGCATTCGCTTAGGAAGAAGAGTAGTAGGAGGAAGAACGCGAGCCGGAGCAATTCTGTTTCCATTGAGGATATTCGGGATGTCAAGGAGCTTCAAGCGGTGGATGCGTTTCGACAGGCGCTCATGTCGGAGAATTTGTTGCCATCAAAACATGATGACTATCACATGTTGTTGAGATTCTTGAAAGCGAGGAAATTCGACATTGAGAAAGCAAAGCAAATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACTGATACAATTATGGAGGATTTTGAGTTCAGTGAGTTGAATGAAGTCCTGCAATACTATCCACATGGTTATCATGGTGTTGATAAGGAAGGGAGACCTGTATATATTGAGAGGCTAGGCAAAGTTGATCCCAATAAGCTTTTGCAAGTAACTACCATGGAAAGGTATTTGAGATATCATGTACAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTCCCTGCATGTTCTTATGCTGCAAAGAGACACATTGATTCAAGTACAACCATTCTGGATGTTCACGGCGTGGGTTTCAAAAACCTAACCAAGTCTGCGCGGGAACTCATCATGCGGCTGCAGAAAATTGACGGTGACTATTATCCAGAAACATTATGTCGAATGTTTATAATCAACGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTATTGATCCCAAAACTTCTTCAAAGATAAATGTTCTCGGAAACAAGTTCCAAAATAAATTACTTGAAATTATTGATGTGAGTGAGCTGCCAGAATTTCTAGGTGGTAGTTGTACTTGCACAGATCAAGGTGGTTGCATGAGGTCAGATAAAGGTCCGTGGCAAGATCCAAACATTTTAAAGAAAGTTCTTAGTGGTGAAATACAATGTTCTAGACAAATAGTGACGGTTTCTAATGATGAGGGAACAGTGATTGAGTGTGATAAAGCTTATCCAATGACAAGAACCAGTGATACATCAACAGCAGAGTCAGGATCTGAAGTTGAAGATATTACTTCCCCCAAAGCTAGTGTGAATTATACAAACCCTAGATTGACTCCTGTCCATGAAGAAGCAAGGTTGGCTGGTAGGGCTAGTCATGCTGGTGGTTTCTCTGTGTATGATGAGTATGTTCCCATGGTTGACAAGACTGTCGATGTTGGGTGGAAGGAAAAGCATTCAACAACTCAAAACTCATTTGGCTCAACAGAAAAATATCTATCGAGGACTGGAAAGTCTGATGGAAACTGTGCATATTTCTGGGCTATTATAGTGGGCTTCTTTGTTGCCATTTTTACTTTTGCTCGTTCAATAGCATTTCGTGTGACCAAAGGAATACAGGACTCTGAAACTGGCTCTTCCCAAAACCCGCCAAAAATGGCTGTTGATTCAATAGTCAATGAGGAATTTCGTCCCCCATCTCCTGCTCCCAGATTCACAGAGGCAGAACTCCTTTCGTCTGCTTCGAAACGCCTTTGTGAGCTTGAAGAGAAGGTTGACATACTAAATTCAAAACCTAATATAATGCCATATGAGAAAGAGGAACTGCTAAATGCTGCTGTTTATCGTGTGGATGCTCTGGAAGCAGAATTGATCGCAACAAAGAAGGCATTGTACGAAGCTTTGATAAGACAAGAAGAGCTTCTGGCGTACATAGATTGTCAGGAGAGAAGGAAATTTGAGCAGAAAAAGAAGTTTTGCTGGTGA 1881 0.4211 MSGPLDRFALPCFEGFSGHHDERRDRRSDYEVSEDERRTRIGSLKKKAINASSKFRHSLRKKSSRRKNASRSNSVSIEDIRDVKELQAVDAFRQALMSENLLPSKHDDYHMLLRFLKARKFDIEKAKQMWANMIQWRKDYGTDTIMEDFEFSELNEVLQYYPHGYHGVDKEGRPVYIERLGKVDPNKLLQVTTMERYLRYHVQGFEKTFAVKFPACSYAAKRHIDSSTTILDVHGVGFKNLTKSARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKSFIDPKTSSKINVLGNKFQNKLLEIIDVSELPEFLGGSCTCTDQGGCMRSDKGPWQDPNILKKVLSGEIQCSRQIVTVSNDEGTVIECDKAYPMTRTSDTSTAESGSEVEDITSPKASVNYTNPRLTPVHEEARLAGRASHAGGFSVYDEYVPMVDKTVDVGWKEKHSTTQNSFGSTEKYLSRTGKSDGNCAYFWAIIVGFFVAIFTFARSIAFRVTKGIQDSETGSSQNPPKMAVDSIVNEEFRPPSPAPRFTEAELLSSASKRLCELEEKVDILNSKPNIMPYEKEELLNAAVYRVDALEAELIATKKALYEALIRQEELLAYIDCQERRKFEQKKKFCW* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3268 626 Pfam CRAL/TRIO, N-terminal domain 105 132 IPR011074 -
Lja5g3268 626 Gene3D - 56 140 - -
Lja5g3268 626 PRINTS Cellular retinaldehyde-binding protein signature 280 299 - -
Lja5g3268 626 PRINTS Cellular retinaldehyde-binding protein signature 111 133 - -
Lja5g3268 626 SUPERFAMILY CRAL/TRIO N-terminal domain 84 149 IPR036273 -
Lja5g3268 626 MobiDBLite consensus disorder prediction 53 68 - -
Lja5g3268 626 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 153 327 IPR001251 -
Lja5g3268 626 Pfam CRAL/TRIO domain 159 321 IPR001251 -
Lja5g3268 626 MobiDBLite consensus disorder prediction 53 74 - -
Lja5g3268 626 SUPERFAMILY CRAL/TRIO domain 153 345 IPR036865 -
Lja5g3268 626 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 622 - -
Lja5g3268 626 SMART sec14_4 153 324 IPR001251 -
Lja5g3268 626 CDD SEC14 154 321 IPR001251 -
Lja5g3268 626 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 622 - -
Lja5g3268 626 SMART CRAL_TRIO_N_2 108 133 IPR011074 -
Lja5g3268 626 Gene3D - 141 351 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3268 Lja-Chr5 63114165 63119781 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3268 5 63114165 63119781 Lja5g3268 5 63114165 63119781 ECH