Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3261 ATGGATTCAGCTTTTGCAACCCTGAATGCTAATCTAGTCATAACAAACAAAGTTTCTAGCTTTTGGGGTGAGAATACAAGGGGAAATTTTAACACCAGATTTTGTAGCATCCCATCATGCCAGAGTTCAAAATCTAGAAAGTCCAAGCCTGGTTTGGTATATGCTGTATACACACCAGACATCAACAAAGAGTCCTTGACATTCCAAGGACCCATTATTCAGAGTCCAAAAGCAAATCCAGATAATGTAGCTGCCATCATATTAGGTGGAGGTGCTGGAAAAAGACTCTTTCCTCTTACAAGCACAAGAGCTAAGCCTGCTGTTCCAATTGGAGGGTGTTACAGACTCATTGATATTCCAATGAGCAATTGCATCAACAGTGGAATCAGGAAAGTATATGTTTTAACACAGTACAACTCTTTCTCCCTCAATGGCCATTTGTCTCGCACATATAATTTTGGAAATGGGGTGAATTTTGGAGATGGTTTTGTGGAGGTCTTGGCTGCTACTCAAACTCCTGGAGAGGCAGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGACAATTTATATGGGTTTTTGAGGATGCAAAGAACAAGAATATTGAGCATATAATGATAATTTCTGGTGATCATCTTTGCCGAATGGACTACATGAAGCTTCTGGAGAAACATATATGGACAAATTCTGATATCACAGTTTCATGTGTACCCATGGATGAAAGCCATGCATCAGACTATGATCTGCTGAGAATTGATAGAAAGGGACAGATTATTCAGTTTGCAGAAAAACCAAAAGGATCAGATCTTAAGGCAATGCATGTTGACACCACTCTCCTAGGGCTTCCTGCAGAAGAAGCGCGAAAACATCCTTACATTGCATCCATGGGTGTTTATGCATTCAGAACTGAGACCCTGCTGAAGCTATTAAGATGGAGCTGTCCTTCATGTAATGATTTTGGCTCTGAACTTATCCCATCTGCTTTGAGAGACCACAAAGTCCAAGCATATTTGTTCAGGGACTATTGGAAAGATATTGGAACTATTAAGTCCTTCTTTGATGCTAATCTGGATCTAACAGGACAGAATCCAAAATTTGAACTCTATGATTCAAAGACACCTTTCTTCACCTCCCCAAGATTCCTCCCGCCAACTAAAGTAGTAAAAAGCAAGATTGTGGATGCAATTATTTCTCATGGTTGCTTCTTAAGTGAGTGTAGTGTTCAACGTTCTATTGTTGGTGTACGCTCACGTTTAGAGTCCGGTGCAGACCTTCAGGATACCATGATGATGGGTGCTGACTACTATCAAACTGATTCTGAAGTTAAATCTCTACTAGCAGAAGGAAAGGTTCCAGTTGGTGTTGGAGAGAATACCAAAATCAGGAACTGTATAATTGACAAGAATGCCAAGATAGGAAGAAATGTTGTTATTGTAAACAGTGATGGTGTTCAAGAAGCTGACAAGCCTACAGAAGGATTTTACATTAGGTCTGGCATAGTAGTTATAGTGAAGAATGCAACAATTAAAGATGGAACCACCATCTGA 1551 0.4023 MDSAFATLNANLVITNKVSSFWGENTRGNFNTRFCSIPSCQSSKSRKSKPGLVYAVYTPDINKESLTFQGPIIQSPKANPDNVAAIILGGGAGKRLFPLTSTRAKPAVPIGGCYRLIDIPMSNCINSGIRKVYVLTQYNSFSLNGHLSRTYNFGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNIEHIMIISGDHLCRMDYMKLLEKHIWTNSDITVSCVPMDESHASDYDLLRIDRKGQIIQFAEKPKGSDLKAMHVDTTLLGLPAEEARKHPYIASMGVYAFRTETLLKLLRWSCPSCNDFGSELIPSALRDHKVQAYLFRDYWKDIGTIKSFFDANLDLTGQNPKFELYDSKTPFFTSPRFLPPTKVVKSKIVDAIISHGCFLSECSVQRSIVGVRSRLESGADLQDTMMMGADYYQTDSEVKSLLAEGKVPVGVGENTKIRNCIIDKNAKIGRNVVIVNSDGVQEADKPTEGFYIRSGIVVIVKNATIKDGTTI* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3261 516 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 72 381 IPR029044 -
Lja5g3261 516 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 180 188 IPR005836 GO:0005978|GO:0008878
Lja5g3261 516 Gene3D Hexapeptide repeat proteins 382 516 - -
Lja5g3261 516 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 14 516 - -
Lja5g3261 516 Pfam Nucleotidyl transferase 85 361 IPR005835 GO:0009058|GO:0016779
Lja5g3261 516 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 14 516 IPR011831 GO:0005978|GO:0008878
Lja5g3261 516 CDD LbH_G1P_AT_C 384 510 - -
Lja5g3261 516 SUPERFAMILY Trimeric LpxA-like enzymes 378 516 IPR011004 -
Lja5g3261 516 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 83 480 IPR011831 GO:0005978|GO:0008878
Lja5g3261 516 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 89 108 IPR005836 GO:0005978|GO:0008878
Lja5g3261 516 SUPERFAMILY Nucleotide-diphospho-sugar transferases 82 478 IPR029044 -
Lja5g3261 516 CDD ADP_Glucose_PP 85 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3261 Lja-Chr5 62964217 62969234 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3261 5 62964217 62969234 Lja5g3261 5 62964217 62969234 ECH
Lja5g3261 5 62964217 62969234 Lja1g3575 1 44476054 44479591 PCT