Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3249 ATGTCATTCAAGAGTATTTTGCAAGAGCTAAAGGAGATAGGAGAGGGCATTGGAAACATGTATAGAAGAGGGGCAGAAGCCAAGCATGTACATCGCCATGGAAAATCTCATATTGCACCAGAATGTTCCTCACCAGCACCAGCACCTTCACCTTCACCTTCATCATCATCATCACAGAGCCGGTGGGCTAGCTTACCCCCTGAGTTGCTACTAGACATAATTCAAAGGGTGGAAGCCAGTGAAACTTCCTGGCCTGCACGCCGAGCGCTTGTAGCGTGTGCATCAGTTTGTAGGTTGTGGAGAGAGATAACAATGGATGTGATCAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTTAAGCAGCCTGGTCCAAGAGACAATCCAATCCAGTGTTTCATTAAGAGAGAAAGGATGACTTCAACATATCGTTTATATCTCGGTCTAAGCCCCGCTCTTTCTGGTGATATGAGCAAGCTGCTATTGGCAGCAAAGAAGATCAGAAGGGCAACATGCACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTAGAGCAAACAATACTTACATTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTGTGACCTTGGATGGTCATACTCCACATGATTCTTCACTTCCATTGAATTACAAGTTGCAGCAAAGAGTTCATGTGAAACAGGTACTTCCAAGGGCTGCTACTGCTGCTAGTGCTAACTATAAAGTGGCCACAGTATCTTATGAACTTAATGTTCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGCGCGATGCACTTAATTCCCATGTCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTTGAAGTTTACCAATTTTCTTAATGAGCATGCATCTACCATGCAAATTCCAAAGGGAAAGAAAGCAGAAACTGTAGTTGAGTTTGGCTCAACTGGCACAAGCAACACTCCAGAATCAACCCAGAGTTCAGTGGAGCCACTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACAGCTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTTAAGAACTTCCAGCTTGTAGCAGCTGTAGAACCTTGCTTGAATGTTTCAGCAGCAGAACAAGAGAAAGTGATACTACAGTTTGGGAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTGAGCAGTTTTGACACAAAACCAGCTTGTGAATGA 1284 0.4455 MSFKSILQELKEIGEGIGNMYRRGAEAKHVHRHGKSHIAPECSSPAPAPSPSPSSSSSQSRWASLPPELLLDIIQRVEASETSWPARRALVACASVCRLWREITMDVIKTPEQCGWLTFPISLKQPGPRDNPIQCFIKRERMTSTYRLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRANNTYIGKLRSNFLGTKFVTLDGHTPHDSSLPLNYKLQQRVHVKQVLPRAATAASANYKVATVSYELNVLRTRGPRRMRCAMHLIPMSAIQEGGTAPTPLKFTNFLNEHASTMQIPKGKKAETVVEFGSTGTSNTPESTQSSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCLNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3249 427 Pfam F-box domain 62 106 IPR001810 GO:0005515
Lja5g3249 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Lja5g3249 427 SUPERFAMILY Tubby C-terminal domain-like 111 427 IPR025659 -
Lja5g3249 427 Gene3D Tubby Protein; Chain A 120 427 IPR025659 -
Lja5g3249 427 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Lja5g3249 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 427 - -
Lja5g3249 427 SUPERFAMILY F-box domain 50 106 IPR036047 GO:0005515
Lja5g3249 427 Gene3D - 55 108 - -
Lja5g3249 427 Pfam Tub family 123 422 IPR000007 -
Lja5g3249 427 MobiDBLite consensus disorder prediction 26 61 - -
Lja5g3249 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Lja5g3249 427 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Lja5g3249 427 PRINTS Tubby superfamily signature 194 218 IPR000007 -
Lja5g3249 427 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Lja5g3249 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Lja5g3249 427 PRINTS Tubby superfamily signature 178 194 IPR000007 -
Lja5g3249 427 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Lja5g3249 427 PANTHER TUBBY-RELATED 1 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3249 Lja-Chr5 62794497 62797569 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja5g3249 Tub 8.6e-102 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3249 5 62794497 62797569 Lja5g3249 5 62794497 62797569 ECH