Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3244 ATGAGTTACAGGGAAGAGAATGAAGAAGGAAGGGATCTCAAGAAACCATTCCTCCACACAGGAAGCTGGTATCGTATGAGTGGCAAACAACAATCCAATTTGTTTGCATCTGCCCATGAAGCCATTCGTGACTCTTCCATCTCTGTCTTTGCATGTGTTCTCATTGTTGCTCTGGGTCCTATTCAGTTTGGTTTCACTGCGGGTTATACATCACCTACCCAAGCTGCTATCATCTCTGATCTGGGACTCTCAGTTTCTGAGTTCTCTTTGTTTGGTTCTCTGTCCAATGTGGGTGCCATGCTTGGAGCAATAGCTAGTGGACAGATTGCTGAATATATAGGACGCAAAGGGTCTTTGATGATTGCATCCATTCCTAATATTATTGGTTGGCTGATCATCTCATTTGCAAATGATACTTCTTTCCTCTATATGGGGAGGTTGTTGGAAGGTTTCGGTGTGGGAATAATATCTTACACGGTGCCGGTGTACATAGCTGAGATATCACCTCAAAACTTGAGGGGAGGTCTAGTTTCAGTTAACCAGCTCTCTGTTACCATTGGAATAATGCTGGCTTATCTTCTAGGGATTTTTGTTCAATGGAGATTCCTTGCAATTTTAGGAATTATACCATGTGCACTATTGATACCTGGACTTTTTTTCATTCCTGAGTCTCCTAGATGGCTGGCAAAAATGGGCATGACAGAAGAATTTGAGACTTCCTTGCAAGTGCTTCGAGGTTCTGGTACCGATATTTCTGTCGAAGTGAATGAAATTAAGACTGCTGTTGCATCAGCAAACAGAACAACTACGGTTCGATTTGCAGAGCTCAGACAAAGAAGATATTGGCTTCCCTTGATGATTGGCATTGGACTGCTTATTTTGCAACAGATTTCTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCAAAATGCTGGAATTAGTTCGAGTGACGTAGCTACATTTGGAGTTGGCGCTGTCCAGGTTCTTGCCACCAGTTTAACTTTATGGTTGGCAGATAAATCTGGTCGCCGGCTTCTACTTATTGTTTCTTCAGCTGCAATGACCTTGAGTCTCTTAGTTGTAGCGGTCTCATTCTATGTGAAGGATTACGTACCAAAGGATTCTTCTTTATATGGGATCCTGAGCCTCTTGTCTGTGGCTGGAGTAGTGGCCATGGTTATTGCATTCTCTTTGGGATTGGGGGCTATGCCATGGATTATAATGTCTGAGATTCTTCCAATTAACATAAAAGGCCTCGCCGGAAGTGTTGCAACACTTGCCAATTGGTTCTTTTCCTGGTTGGTTACATTGACCGCAAATATGCTCTTGGACTGGAGCTCTGGAGGAACCTTCACCATCTACACAGTAGTGTGTGCTTTGACTGTAGGATTTGTTGTCATTTGGGTCCCTGAGACAAAGGGAAAAACTCTTGAAGAAATCCAATCGTTTTTCAGATGA 1467 0.4267 MSYREENEEGRDLKKPFLHTGSWYRMSGKQQSNLFASAHEAIRDSSISVFACVLIVALGPIQFGFTAGYTSPTQAAIISDLGLSVSEFSLFGSLSNVGAMLGAIASGQIAEYIGRKGSLMIASIPNIIGWLIISFANDTSFLYMGRLLEGFGVGIISYTVPVYIAEISPQNLRGGLVSVNQLSVTIGIMLAYLLGIFVQWRFLAILGIIPCALLIPGLFFIPESPRWLAKMGMTEEFETSLQVLRGSGTDISVEVNEIKTAVASANRTTTVRFAELRQRRYWLPLMIGIGLLILQQISGINGVLFYSSTIFQNAGISSSDVATFGVGAVQVLATSLTLWLADKSGRRLLLIVSSAAMTLSLLVVAVSFYVKDYVPKDSSLYGILSLLSVAGVVAMVIAFSLGLGAMPWIIMSEILPINIKGLAGSVATLANWFFSWLVTLTANMLLDWSSGGTFTIYTVVCALTVGFVVIWVPETKGKTLEEIQSFFR* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3244 488 ProSiteProfiles Major facilitator superfamily (MFS) profile. 52 476 IPR020846 GO:0022857
Lja5g3244 488 PRINTS Sugar transporter signature 60 70 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja5g3244 488 PRINTS Sugar transporter signature 389 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja5g3244 488 PRINTS Sugar transporter signature 143 162 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja5g3244 488 PRINTS Sugar transporter signature 412 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja5g3244 488 PRINTS Sugar transporter signature 295 305 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja5g3244 488 CDD MFS_GLUT6_8_Class3_like 50 482 IPR044775 GO:0008643|GO:0051119
Lja5g3244 488 ProSitePatterns Sugar transport proteins signature 2. 148 173 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja5g3244 488 SUPERFAMILY MFS general substrate transporter 53 484 IPR036259 -
Lja5g3244 488 PANTHER SUGAR TRANSPORTER ERD6-LIKE 6 15 486 - -
Lja5g3244 488 Gene3D MFS general substrate transporter like domains 43 488 IPR036259 -
Lja5g3244 488 ProSitePatterns Sugar transport proteins signature 1. 106 123 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja5g3244 488 TIGRFAM SP: MFS transporter, sugar porter (SP) family 41 483 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja5g3244 488 Pfam Sugar (and other) transporter 53 486 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja5g3244 488 PANTHER - 15 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3244 Lja-Chr5 62760816 62765205 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3244 5 62760816 62765205 Lja5g3244 5 62760816 62765205 ECH