Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3242 ATGACTTCAAGTTCAGGTTGGACAACAAAGCAGAACAAGAGATTTGAGAATGCTCTGGCCATTTACGATAAGGACACGCCGGATCGGTGGCAGAAACTGGCCCGGGCCGTCGGAGGGAAGACAGTGGAGGAAGTGAAGAAGCATTATGAGATGCTTGTGGACGACTTGAAGCAGATTGAGGAAGGTCATGTGCCCTTGCCTAACTACAGAAATGCTGCAACAATAGGAGGCAGCAACAAAGGTTACACTTATATGGATGAAGAACAAAGGATGAAATTTCTAAGCCTCCAGTGA 294 0.4694 MTSSSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPLPNYRNAATIGGSNKGYTYMDEEQRMKFLSLQ* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3242 97 CDD SANT 7 53 IPR001005 -
Lja5g3242 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 97 - -
Lja5g3242 97 Gene3D - 1 66 - -
Lja5g3242 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 97 IPR044636 GO:0003700
Lja5g3242 97 SMART sant 3 55 IPR001005 -
Lja5g3242 97 ProSiteProfiles SANT domain profile. 2 52 IPR017884 -
Lja5g3242 97 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3242 Lja-Chr5 62747652 62748818 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja5g3242 Myb_DNA-binding 2.3e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3242 5 62747652 62748818 Lja5g3242 5 62747652 62748818 ECH
Lja5g3242 5 62747652 62748818 Lja1g3594 1 44658966 44659652 PCT