Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3241 ATGAGCATGGGAGTGAAGCGAGGAGTAGCAGTGAGTTCAGTTATGGTTTTGTTTTTGTTGATTGAATTAACATCAACTACTAGTTTAAGTTTAAGCTTGAGCTCCAGAACTGAATGGTTTTCATTGCTGGAACTTCGTTCTTCACTGGGGATAAGGGGAAAGGATTGGCCCATCAAAGCTGAACCATGCCGGAACTGGACCGGGGTTCAGTGCCGGCACGGTCGAGTGGTGGGCATCCACGTGGCTGGGTTGAGGAGAACCCGGTCGGGTCGTCTCAACCCGAGCTTTGAAGTGGATGCTCTCAAGAATTTCACTCTATTGGAGTCTTTCAACGCTTCAGGGTTCATGCTGAACGGGTCTATTCCAGAGTGGTTTGGTGAGAATCTTAGTGTACTTCAAGTGCTTGATTTAAGGTCTTGTTCAATAACTGGTGTTATTCCTGGTTCACTTAGTAATTTGAGGATGTTGAAGTCTTTGTTGCTTTCAGGGAATAGTCTCACTGGTAGAATGCCTTCAAATTTGGGATTTTTATCAGGGCTTTCTGTTCTTGATCTTTCTGGGAACATCCTTTCAGGAATAGTACCCAGCTCTTTCTCTAAGCTTAGTAACATTACAAGGCTTGATCTTGGTTCTAATTACTTATCTGGGTCTGTTCCACCTGAATTGGGTTCCCTTTCAAATCTCAAATTTTTAAACCTTTCTGATAATGCCTTCACTGGTTCTGTCCTTCCTCAACTGAGTAACCTTTTTAAATTGGTTGAGCTTGATCTTAGCATGAATTTTCTGTCCGGGTCGTTGCCTGGTAATTTGTTTTCTTCTGCTCATTCTGCACTTCAAGTTGTTGATGTATCCAACAACAACCTCACTGGTCTATTGCCTGAATGGTCTAGTTCAAAATTTAGCTCTACTGGTGCCAGATTCAATCTCTCAAACAATTTGTTTTATGGATCTCTGAATACTTCACTGAATAAGTTTAAAATGATTGATTTGTCTGGTAATTATTTGGAAGGTGAGGTCCAGGGTGGCCTTAGTAATAATGTTACTCTAGCAAGAAATTGCCTGCAGATGATTCCAAACCAGAGGGGTTTGGAAGAGTGTAGAGTGTTTTATGTTAAGAGAAATTTACTATTTGATGCTGGTGGCGAAGATCTAATGAAGTCTAAGTCCAGGAGCAACAAACGAATGATATTCATACTGGCAGGAGTATTTGGTGGTCTTGGATTTATTGTGCTACTGGTGTTGGTCCTCATGCTGGTCCTAAAACAATGTTATAAGAGTAAAAGCTTGGAAATTCAAAGGGGGACCGCAAAAGGGGGGCCGGTTCCGGAAGGGGAAAGTCCTACACCTCCTAAGGGTTCTGTCTTTGTAACCAGTGTGGGAGACTCATTTACTTTTGAGCAAATGCTCAATTTGACTGGCAATTTTGCTAAAGCAAATCTCTTCAAGCATGGTCACTCTGGAGACCTCTTTTGGGGAGTGTTGGAAAGTGGAGCAACTGTGGTTGTCAAAAAGGTAGATTTGAATTTATTCAAGAGAGAATCGTACTTTGCGGAATTGGGTTTGTTAAGCAAGGTTTCACATGCTAGACTGGTCCCTATCCTGGGGCACTGCTTGGAGAATGAGAAGGTGAAATGTATAATTTACAAGTACATGCCAAATGGAGATTTGGCTACTTCCTTGCACTCAGTCCCTAGCTCAGATGGTAAATTAAAGTCCTTGGATTGGATCACGAGACTGAAAATCGCAATAGGAGCTGCTGAAGGCCTAGCTTACTTACATGAGTGCAGCCCTCCCCTTGTTCACAGAGATGTTCAAGCTAGCAGTATACTTCTTGATGATAAATATGAGGTGCGACTTGGAAGTTTGAGTGAGATTACTGCCCAAGAAGATCTTCATCAGAGTGTCATCTCAAGGGTTTTTAGCAAGCCTAGATCTCCTATTGAATGCAATTCTGATAAATCATCTGTGACATGTGCCTATGATGTCTACTGTTTTGGGAAGGTTTTACTTGAGCTTGTTACCGGCAATCTCGACATCAGCAAATCAGATGATGCCGCCACCAAAGAGTGCTTAGATCAAACGCTGAGCTACATCACCATATTTGATAAAGAACGATTGAGTAAGATCGTTGACCCGTCTTTGATCGTCGATGAGGACTTGTTGGAAGAGGTATGGGCAATGGCGATTGTGGCCAAGTCATGTCTGAATCCAAAGCCTTCCAAACGCCCTCCTATGAAGCATGTCCTCAAAGCACTGGAAAATCCATTGAAGATTGTGAGAGAAGAAAATTTCAGCTCAGCAAAGCTGAGAACAACTTCATCTAATAGGTCTTGGAGCACTGCATTCTTTGGTAGCTGGAGGCACAGCTCATCAGAGAGTGCATCTGCCACAGCACATGGAAATAGGGAAGGTGGTACTAGTGGCATTAAACAAGCAGGAAGAGTAGGCTCTCAAGGTAGTGGTGGCAATGATCATTCATCTTCCAATAAAAGGTCATCCAATGAAATTTTCCCTGAACCTTTGGAAATGCAAGATGTGGAGACTGGAGAGGCAAGATGA 2559 0.4275 MSMGVKRGVAVSSVMVLFLLIELTSTTSLSLSLSSRTEWFSLLELRSSLGIRGKDWPIKAEPCRNWTGVQCRHGRVVGIHVAGLRRTRSGRLNPSFEVDALKNFTLLESFNASGFMLNGSIPEWFGENLSVLQVLDLRSCSITGVIPGSLSNLRMLKSLLLSGNSLTGRMPSNLGFLSGLSVLDLSGNILSGIVPSSFSKLSNITRLDLGSNYLSGSVPPELGSLSNLKFLNLSDNAFTGSVLPQLSNLFKLVELDLSMNFLSGSLPGNLFSSAHSALQVVDVSNNNLTGLLPEWSSSKFSSTGARFNLSNNLFYGSLNTSLNKFKMIDLSGNYLEGEVQGGLSNNVTLARNCLQMIPNQRGLEECRVFYVKRNLLFDAGGEDLMKSKSRSNKRMIFILAGVFGGLGFIVLLVLVLMLVLKQCYKSKSLEIQRGTAKGGPVPEGESPTPPKGSVFVTSVGDSFTFEQMLNLTGNFAKANLFKHGHSGDLFWGVLESGATVVVKKVDLNLFKRESYFAELGLLSKVSHARLVPILGHCLENEKVKCIIYKYMPNGDLATSLHSVPSSDGKLKSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVQASSILLDDKYEVRLGSLSEITAQEDLHQSVISRVFSKPRSPIECNSDKSSVTCAYDVYCFGKVLLELVTGNLDISKSDDAATKECLDQTLSYITIFDKERLSKIVDPSLIVDEDLLEEVWAMAIVAKSCLNPKPSKRPPMKHVLKALENPLKIVREENFSSAKLRTTSSNRSWSTAFFGSWRHSSSESASATAHGNREGGTSGIKQAGRVGSQGSGGNDHSSSNKRSSNEIFPEPLEMQDVETGEAR* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3241 852 SMART LRR_typ_2 249 273 IPR003591 -
Lja5g3241 852 SMART LRR_typ_2 276 298 IPR003591 -
Lja5g3241 852 SMART LRR_typ_2 177 200 IPR003591 -
Lja5g3241 852 SMART LRR_typ_2 201 225 IPR003591 -
Lja5g3241 852 SMART LRR_typ_2 129 152 IPR003591 -
Lja5g3241 852 SUPERFAMILY L domain-like 60 336 - -
Lja5g3241 852 Gene3D Ribonuclease Inhibitor 38 195 IPR032675 -
Lja5g3241 852 MobiDBLite consensus disorder prediction 793 852 - -
Lja5g3241 852 MobiDBLite consensus disorder prediction 811 835 - -
Lja5g3241 852 Pfam Leucine rich repeat 122 166 IPR001611 GO:0005515
Lja5g3241 852 Pfam Leucine rich repeat 179 237 IPR001611 GO:0005515
Lja5g3241 852 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 14 270 - -
Lja5g3241 852 PANTHER RECEPTOR-LIKE PROTEIN 55 14 270 - -
Lja5g3241 852 SUPERFAMILY Protein kinase-like (PK-like) 452 752 IPR011009 -
Lja5g3241 852 Gene3D Transferase(Phosphotransferase) domain 1 551 776 - -
Lja5g3241 852 ProSiteProfiles cAMP/cGMP binding motif profile. 480 533 IPR000595 -
Lja5g3241 852 ProSiteProfiles Protein kinase domain profile. 475 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3241 852 Gene3D Phosphorylase Kinase; domain 1 450 550 - -
Lja5g3241 852 PANTHER RECEPTOR-LIKE PROTEIN 55 274 806 - -
Lja5g3241 852 Pfam Protein tyrosine and serine/threonine kinase 484 751 IPR001245 GO:0004672|GO:0006468
Lja5g3241 852 Gene3D Ribonuclease Inhibitor 196 390 IPR032675 -
Lja5g3241 852 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 274 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3241 Lja-Chr5 62709611 62714608 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Lja5g3241 PK_Tyr_Ser-Thr 2.5e-23 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3241 5 62709611 62714608 Lja5g3241 5 62709611 62714608 ECH