Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3230 ATGGCTCAACGCGCCGCCGCTACCTCCGATTCTCCCCTCCGTGTCGCCGCCGCACCTCCATTGCAGATCTCCAAAGATGTCACAGGCTCTGACAATCCTATTCCACTTTCACCACAGTGGCTTCTGCCAAAGCCCGTGGAGAGTAAACCTGGATCAGGAAATGTGGGAAACAATGTGATCTCAATTCCACCATATGGCACCCACTCAGAGACTGTTAAGACATCTGGTAATGGAGAGGATGGGCATGATGTCCAAAAGAGAAAGGATGTGTTTAGGCCATCCATGCTGGACTCAGAAAGTGGACGTCGTGATCGTTGGCGTGATGAGGAGAGAGAAACTAAGTCTGCCACACGTAAAGATCGTTGGAGGGACGGGGACAAAGACCTAGGTGATTCTCGGAAAGTGGATCGATGGGCAGATAGTCTTCCTTCAAAGAACTTAGGAGAAGCACGTCGTGGTGCATCTGATAGTCATAGACGGAATGATTCAGGAAACCGAGAAACTAACTTTGATCAGCGACGTGAGAGTAAGTGGAACACACGTTGGGGTCCTGACAATAAGGAGCCAGAAGGTCCTCGTGAAAAATGGAGCGATTCTGCAAAAGATGGTGATATACATCTGGACAAAGGCTTGTCTCACATTTCCAATCTTGGAAAGGATGAGAAGGAGGGAGACCATTATCGACCTTGGAGACCTAATTACTCACAAAGCCGTGGAAGGGTAGAGCCTCCCCATTCCCAGAACACAACGCCTAACAAACAAGCCTCCACATTTTCCTATGGGCGTGGTCGTGGGGAGTATACACCTCCAATCTTAAGTCTTGGACATGGGCGTTCCGGCTCTGGTGGTAACTCTCTAAATAGCACATATGCTGGCGCTCCATTGGATAAAGTCGAAAGTGGACATGACGATCCTGGCCACTTCAGATATAATAGGACTAAGTTGCTTGATTTGTACAGAGTGACTGATGTCGGTACAAATAGAAAACAGGTTGATGAATTTGTGCAGGTACCTAATCTCACACAGGATGAACCTGTGGAGCCTCTAGCTCTTTTTGCACCAACATCTGAGGAACTGACTGTCTTAAATGGTATTGACAAAGGGGAAATAATTAGTAGCAGTGCGCCTCAAGTTCCAAAGGATGGAAGGGGATCAACAGATTTCACTCATACTAGACGAATGAAGCTTGGAAGTTCTCCTCTTCAAGATAGAGTTGAAGGTGGAGGTTCTGACAGAGTAGCTGATGAGTTGTCCAGTAATAGAGATTCATCCTTTGAAGGAAATAGTAATGTTCATTCTGGTGCTGGATGGAGAGCCATGCCAGGAGGTGAGCAGGCAACTGCTCTTCTGCATGATAGCAGAGATGTATCAAATGATGCTAGAATCAGAAAATCAGATATGAGCTCGCACCAGCCAAAAGATCCTTTTAATCAGCGGGGAAATAATTTGAGTTATTTATCTGACTCCAAAGACGTAGGTAAGTGGCATGCTAGTGGAGATCCCAATGTTAAGAGGCAGCTATCTGGCATTTTTGACAGTGAACTTGAATCCAGGAGAGTTCCTCCGACTGCTCCAGAGGAGTTATCCCTTTTTTATAAAGATCCAAACGGTCAAATCCAAGGTCCATTTAAAGGGATTGATATTATTGGATGGTTTGAGGCTGGATATTTTGGTATTGACCTACCTGTTCGTCTGGAAAATTCAGCTGCTGACTCACCATGGTTGTCTCTTGGTGATGCCATGCCCCATTTACGTGCTAAAGCTCGACCTCCACCAGGATTTTCTGCACCGAAACCAAATGAGTTTACAGATATATCTGTCCGGCAAAATTCTAGTACATTTGGAAATACTCTTACTGGATTGAGTGAGAGTGAACTATTGAAAAGTGATTCAAGACATAGGCAGGGTGCTGATAGTGAAGCTGAAAATAGGTTTATGGAGCCATTCATGTCTGGTAGCAAAAGCAGTCCTGCACTTGACAGCCTGAAATTATCTGAAGGTTTTCATGGGTTCGTTGGAAATGATTCTGGTAGTTTTGGCTCATCAGGAGTAGATAGTGGAAGCAACCTTTACTCAGTTGCCAATAGGCTGGCACTTGAACGCCAGATGTCCTTACCCAAACCTTACCCATATTGGCCTGGGCGGGATGCACCTTCAGTCGCCCCAACATCAAATATTGTCCCTGATGCATCACTGCAATCAAAACTCTTGTCTTCAGTGAATGATAATTCCCACCAACCTCAGTCCGTGAATTCTGAGTTGATGTCAATCATCCAGGGATTATCTGACAGGACATCTGCAGGTGTAAATAATGGTGCTGCTGGTTTGCCAAATTATCCGTTACAGAATAATGTTGACTTACTTCTTAATCAGAGTTTGCCTCAAATGCCATTTGGAATTCAACAACAAAGGCTGCCCACACAAAACCAGTTGTCTATGAGCAATTTACTCGCTCAAGCTGCTGATAACCCATCTAGTGCTTTGACAGCAGAGAAGCTACTTTCTTCTGGTTTATCACAAGATCCTCAAATATTGAATCTGTTGCAACAACAATACTTGTTGCAGTTGCATTCTCATGCGGCTGCTCCAGCACATCAGCTGCCCCTATTAGATAAACTCCTGTTGTTGAAGCAGCAACAGAAGCAGGAGGAGCAGCAGCTATTATTGCGGCAACAACAGCAACAACTACTATCTCAAGTCCTTCAGGAGCAACATTCTAGCCAGATCTTTGGTAATTCATCTTATGGACAATTGCAAGGTGTCTCACCAATGGGGAAGTTGCCTGTGGATTCTTCTCAACTTCATCTACCACAAGAGATTTTTCCCATCAGCTCTCAGACACCAATTCCAAGTGTGCACAATGAACCTAGTTCTGGTACTTCGAATTTACCTCTAAAAGCAAGTCAAGACACAAGTTATAATCCCCATAATGAAGCTTCTTCCATACGTCTGCCCCACGAATTATTTGGGGACATTAGTCCTCAGAAAAGCTGGGGTCCTACTCTTCATGAGCAAAATAATGAGAAGTATCAGAAGGAGATATTACCTGCATCTTCTAAGCCATTTGAGAAACCTGAACATCCACAGGGTGCTCAACCTGTAGTGGAATCTTCAACCGGACCTCGTGGGATTGTGTTACCACCAGCAAGTAATATTGGTTTGGATGTGAAGATCAAATCAGATAATGTGCAAGAGCTGCAGTCGGGAAGAGAAAGCTCCATCGCTGACACCTCTGTAGGAGTACGTGTTGAAGCACAGGAACCCAAGAAGGCTACTGAGAAGAAATCTAAAAAGCAGAAAGCTACCAAATCTCAATCTTCTGATCAAGCAAAGGGATTGCTGAAAAATGTGACCTCGGAGCTGTCTAAGCAATCAGAAGCTAAGATGCCAAATTTTAATGAGTTGGGGGAGGCCAACAAAGATGAATATGTAACATATCTGCAACAAATAAAGGGCAAGGAAAATCAGATTGGAAATGCTGTCCCAGAGGCTGTCGATCATCAAGAAGTTAGTTGCCTGCCTGCTAGTGTTACGAAAAGCATCACTGAAACAGTTCTTGTGGGCGAGTCCAACGCAGCAGCTGGTTCTGTTTCCTCACAAAATACTGGTGTGCCTGCAGGAAGAGCTTGGAAACCCGCTCCAGGTATCCGGGCAAAGTCTTTATTAGAAATTCAACAGGAAGAACAGAGAAAGGCCGAGGCAGAAATGCTTGCATCTAAAGTTGCTACTGCTGTCAATTCCATGAGTTTGGCATCTCCATGGGTTGGAGTTGGTGGAGGGGCCAATTCTGACTCTGTAAAAGTATCTGGTGAAAGTCACAGAGGAGGCAATATAGAATATCCTGTTCTATCTGAAACTTCTCAAAATATTAAGAGCAAGAAAAGTCAGCTACATGATCTATTAGCAGAAGAAGTTCTAAAGAAATCTAATGAAAAAGATGCTGAGGTTCCAGATAGTGCATTGTCCTCCAATAATTTAACTGTTCATTCAGAACCACTAGATGATAGCAGCTTTATTGAGGCAAAAGATTCTAAAAGAAACCGTAAAAAGTCTACAAAATCCAAGGGTTCAGGAGCTAAAACTCTGGTTTCTGTTGCATCTGCTGAAGCACCTATGGCTTCAAGCCCCATTGAAAAAAGTAAAAGTTTCCGCTCTGCGCAGCAGGAGAAAGAAGTATTGCCACCAATCCCTGCAGGACCCTCTTTGGGAGACTTTGTTCTTTGGAAAGGAGAACAAGAGCCGCCAAGCCCATCTCCTTCTCCAGCATGGTCTACTGATTCTGGCAGGATTCCCAAACCAACTTCACTAAGGGACATTCTGAAGGAGCAGGAGAAAAAAACTTCTTCTGCTGTGCCTGCAAACCCTGTGCCTACCCCTCAGAAATCACAGCCTACCCAGGCTACTTGGAATAGTGCTTCTTCACAGTCAATTTCAGCTTCCTCTCCTTCTAAAGCTGCCTCCCCAATTCAAATAAACTCCCATGCTCCTTCCCAGTCAAAATACAAAGGGGATGATGACTTATTTTGGGGCCCAATTGAGCAGCCTAAGCAAGAAACTAAGCAGTCAGATTTCCCTCAGCTTGCAAGTCAGGGAAGCCGGGGTTCAAAAAATATACCCTTAAAAAAAGGCACTTCAACTGGATTATTAACCAGACAAAAATCAGCGAGTGGTAAACCAACTGAACGGCCTCTATCATCATCACCTGCCTCTTCCCAACCGGTGCTGAAATTGAAAAAAGATGCCATGACTAAGCTTTCTGAGGCCATAGGCTTCAGAGATTGGTGTGAGAATGAGTGTGTCAGGCTTATTGGGACAAAAGATACAAGTTTCCTTGAATTTTGCTTGAAGCAATCCAGATCAGAAGCTGAGATGTTTCTCATAGAAAACCTTGGATCATTCGACCCTGACCATAAATTTATTGATAAATTCCTCAATTACAAGGAGCTGTTACCTTCAGATGTTTTGGACATTGCTTTTAAGAGCAGGAATGATAAGAAAGTCACTGGACTTGGTGCTGCAGGCATGGTATCAGCAAATGCAGATTTACAGGACGGGGACCACACTGAAGGAACCTCTAAAGGAAAGAAGAAGGGTAAAAAAGGAAAAAAGGTGAGTCCTGCAGTTTTGGGATTCAATGTTGTGAGTAACCGGATCATGATGGGTGAGATCCAAACCGTAGAAGATTAA 5187 0.4425 MAQRAAATSDSPLRVAAAPPLQISKDVTGSDNPIPLSPQWLLPKPVESKPGSGNVGNNVISIPPYGTHSETVKTSGNGEDGHDVQKRKDVFRPSMLDSESGRRDRWRDEERETKSATRKDRWRDGDKDLGDSRKVDRWADSLPSKNLGEARRGASDSHRRNDSGNRETNFDQRRESKWNTRWGPDNKEPEGPREKWSDSAKDGDIHLDKGLSHISNLGKDEKEGDHYRPWRPNYSQSRGRVEPPHSQNTTPNKQASTFSYGRGRGEYTPPILSLGHGRSGSGGNSLNSTYAGAPLDKVESGHDDPGHFRYNRTKLLDLYRVTDVGTNRKQVDEFVQVPNLTQDEPVEPLALFAPTSEELTVLNGIDKGEIISSSAPQVPKDGRGSTDFTHTRRMKLGSSPLQDRVEGGGSDRVADELSSNRDSSFEGNSNVHSGAGWRAMPGGEQATALLHDSRDVSNDARIRKSDMSSHQPKDPFNQRGNNLSYLSDSKDVGKWHASGDPNVKRQLSGIFDSELESRRVPPTAPEELSLFYKDPNGQIQGPFKGIDIIGWFEAGYFGIDLPVRLENSAADSPWLSLGDAMPHLRAKARPPPGFSAPKPNEFTDISVRQNSSTFGNTLTGLSESELLKSDSRHRQGADSEAENRFMEPFMSGSKSSPALDSLKLSEGFHGFVGNDSGSFGSSGVDSGSNLYSVANRLALERQMSLPKPYPYWPGRDAPSVAPTSNIVPDASLQSKLLSSVNDNSHQPQSVNSELMSIIQGLSDRTSAGVNNGAAGLPNYPLQNNVDLLLNQSLPQMPFGIQQQRLPTQNQLSMSNLLAQAADNPSSALTAEKLLSSGLSQDPQILNLLQQQYLLQLHSHAAAPAHQLPLLDKLLLLKQQQKQEEQQLLLRQQQQQLLSQVLQEQHSSQIFGNSSYGQLQGVSPMGKLPVDSSQLHLPQEIFPISSQTPIPSVHNEPSSGTSNLPLKASQDTSYNPHNEASSIRLPHELFGDISPQKSWGPTLHEQNNEKYQKEILPASSKPFEKPEHPQGAQPVVESSTGPRGIVLPPASNIGLDVKIKSDNVQELQSGRESSIADTSVGVRVEAQEPKKATEKKSKKQKATKSQSSDQAKGLLKNVTSELSKQSEAKMPNFNELGEANKDEYVTYLQQIKGKENQIGNAVPEAVDHQEVSCLPASVTKSITETVLVGESNAAAGSVSSQNTGVPAGRAWKPAPGIRAKSLLEIQQEEQRKAEAEMLASKVATAVNSMSLASPWVGVGGGANSDSVKVSGESHRGGNIEYPVLSETSQNIKSKKSQLHDLLAEEVLKKSNEKDAEVPDSALSSNNLTVHSEPLDDSSFIEAKDSKRNRKKSTKSKGSGAKTLVSVASAEAPMASSPIEKSKSFRSAQQEKEVLPPIPAGPSLGDFVLWKGEQEPPSPSPSPAWSTDSGRIPKPTSLRDILKEQEKKTSSAVPANPVPTPQKSQPTQATWNSASSQSISASSPSKAASPIQINSHAPSQSKYKGDDDLFWGPIEQPKQETKQSDFPQLASQGSRGSKNIPLKKGTSTGLLTRQKSASGKPTERPLSSSPASSQPVLKLKKDAMTKLSEAIGFRDWCENECVRLIGTKDTSFLEFCLKQSRSEAEMFLIENLGSFDPDHKFIDKFLNYKELLPSDVLDIAFKSRNDKKVTGLGAAGMVSANADLQDGDHTEGTSKGKKKGKKGKKVSPAVLGFNVVSNRIMMGEIQTVED* 1729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3230 1728 MobiDBLite consensus disorder prediction 51 74 - -
Lja5g3230 1728 SUPERFAMILY GYF domain 517 584 IPR035445 -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 462 483 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1316 1332 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1515 1573 - -
Lja5g3230 1728 Pfam GYF domain 531 576 IPR003169 GO:0005515
Lja5g3230 1728 MobiDBLite consensus disorder prediction 627 652 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1308 1575 - -
Lja5g3230 1728 Coils Coil 875 895 - -
Lja5g3230 1728 Gene3D - 516 595 IPR035445 -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 151 229 - -
Lja5g3230 1728 ProSiteProfiles GYF domain profile. 527 578 IPR003169 GO:0005515
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1681 1703 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1019 1049 - -
Lja5g3230 1728 Coils Coil 1283 1303 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 627 641 - -
Lja5g3230 1728 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1728 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1063 1112 - -
Lja5g3230 1728 SMART gyf_5 528 583 IPR003169 GO:0005515
Lja5g3230 1728 MobiDBLite consensus disorder prediction 239 261 - -
Lja5g3230 1728 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1728 - -
Lja5g3230 1728 CDD GYF 527 584 IPR003169 GO:0005515
Lja5g3230 1728 MobiDBLite consensus disorder prediction 75 140 - -
Lja5g3230 1728 Coils Coil 1217 1237 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 944 978 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1 265 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1086 1104 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 1447 1498 - -
Lja5g3230 1728 MobiDBLite consensus disorder prediction 372 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3230 Lja-Chr5 62598244 62607391 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3230 5 62598244 62607391 Lja5g3230 5 62598244 62607391 ECH
Lja5g3230 5 62598244 62607391 Lja1g3600 1 44737220 44745874 PCT