Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3213 ATGGAGTTCATGGTTCGGTGTAGTTCTTCCAGATGTTGCAGTAAGCTTCGATTCGCTGTTTTCGTTTTCCAGATTGTATTGATATTGGCATGGCTGGAAGTCAATGATGCAAAGCTCCAAGAAGGCTTGGAAGGGAGGGTTGAGAACGTTGCTTCGCACTCTTGCATACATGACCAGATACTTGAACAGAGAAAGCGACCTGGTCGCAAGGTCTATTCGATTACCCCGCAAGTTTATGAGCCTGGTCTTTCGAAACCCCTTCAGCATCATGGAAGGGTGTTACTCAGTTTATCTACATCATCGGAGCCTCAAAAGGATGTAAAGCAACCGATTAGGATATATCTAAATTATGATGCTGTTGGACACTCCCCTGACAGGGATTGTCGAAAAGTTGGTGATATTGTCAAGCTTGGAGAGCCTCCCGTCACTTCGCTTTCTGGTTTGCCATCTTGTAATCCTCTTTCTAAACCTCCAATCTTTGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAGGCAACGTCTTCGGAAGGCTTTAGGTCAAACAGCTGACTGGTTTAGGAGAGCATTGGCTGTGGAGCCTGTCAAGGGGAACTTGCGACTGAGTGGATATTCTGCATGTGGACAAGATGGCGGCGTGCAGCTTCCTCGTGAATATGTTGAAGAGGGAGTCTCTGATGCAGACTTAGTTCTTTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCAGTGGCATGTGAACGGGATCAATGGGGTCGTGCTATAGCGGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCCGAGACTTTACTATCAGCTACTCTTATACATGAGGTTATGCATGTTCTCGGTTTTGATCCTCATGCCTTTGCTCATTTTAGAGATGAAAGAAAAAGACGTCGCAGTAAGGTTACTGAACAAGTTATGGATGAAAAGATTGGGCGGATGTCAACACGTGTGGTGCTTCCACGTGTTGTCATGCACTCACGACATCATTATGCGGCATTCTCAGGAAACTTTACTGGTTTAGAGCTGGAAGATGGTGGAGGGCGTGGCACATCAGGGTCTCATTGGGAAAAAAGGCTTCTCATGAATGAGATCATGACTGGCTCAGTGGATACAAGATCTGTAGTTTCAAAAATGACTCTAGCTCTCTTAGAAGATAGCGGATGGTACAGGGCCAATTATAGCATGGCAGACCGTCTTGATTGGGGTCGCAACCAGGGTACTGAGTTTATTACCTCCCCTTGCAATCTCTGGAAGGGGGCCTATCATTGCAACACAACACAATTTTCAGGTTGTACTTATAACAGAGAGGCAGAGGGTTACTGCCCAATTCTAACCTATAGTGGAGACCTTCCTCAGTGGGCTCGGTATTTTCCACAGGCTAATAAAGGTGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTCGCGTACTCAGATGGATCATGTACAGATACTAACAGTGCACGGGTACCAGATAGGATGCTCGGTGAAATTCGAGGAAGTAACTCTAGGTGTATGGCCTCATCATTAGTGCGTACAGGATTTGTACGAGGTTCTATGACCCAAGGAAATGGTTGTTATACGCACAGGTGTATCAACAATTCTTTAGAGGTTGCTGTGGATGGTATCTGGAAAGTCTGTCCTCAAGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGGTGAATTAATTTGCCCTGCATATCATGAGCTCTGTAACACAGACACAGCGGTTGTGTCTGGGCAATGTCCCAGTGGATGTAATTTCAATGGAGATTGTGTTGATGGAAGGTGCTCCTGCTTTCTTGGATTTCATGGTCATGATTGTAGTAGACGTTCCTGCCCCAGCAGTTGCTCTGGCAATGGCATGTGTCTCTCCAATGGAATGTGTGAATGTAAAACGGGCTACACTGGCATTGATTGTTCAACCGCTATTTGTGATGAGCAATGCAGCCTTCATGGCGGGGTTTGTGACAATGGAGTCTGTGAATTCCGTTGCTCTGACTATGCGGGATACACTTGCCAGAACAGCTCCATGCTCCTCTCCAGTCTTTCAGTTTGCAAAAATGTTCTAGGAAATGATATTTCTGGGCAGCATTGTGCACCCAGTGAACCTAGCATACTGCAGCAGCTAGAAGAAGTGGTTGTCATGCCCAACTACCACCGATTGTTCCCCAGTGGTGCTAGGAAATTATTTAATATATTTGGCAGTACCTACTGTGATGAGGCAGCTAAACGGCTTGCTTGCTGGATCTCAATCCAGAAGTGTGACAAGGATGGAGACAACAGGCTCCGAGTATGTCATTCTGCATGTCAGTCTTATAATCTAGCATGTGGAGCTTCACTGGACTGTGGTGACCAAACCCTTTTCAGCAGCAAGGGGGAGGGTGAGGGTCAATGCACCGGCTTTGGCGAGATGAAATTATCGTGGTTTAATCGTCTGAGAACTAGTTTTTCTTGGAGAAATAGTTCCTCAAGAGGAATATTTTTAAGACATAGGCAGCTTTAG 2556 0.4581 MEFMVRCSSSRCCSKLRFAVFVFQIVLILAWLEVNDAKLQEGLEGRVENVASHSCIHDQILEQRKRPGRKVYSITPQVYEPGLSKPLQHHGRVLLSLSTSSEPQKDVKQPIRIYLNYDAVGHSPDRDCRKVGDIVKLGEPPVTSLSGLPSCNPLSKPPIFGDCWYNCTSEDISGEDKRQRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPREYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRSKVTEQVMDEKIGRMSTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYRANYSMADRLDWGRNQGTEFITSPCNLWKGAYHCNTTQFSGCTYNREAEGYCPILTYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARVPDRMLGEIRGSNSRCMASSLVRTGFVRGSMTQGNGCYTHRCINNSLEVAVDGIWKVCPQAGGPIQFPGFNGELICPAYHELCNTDTAVVSGQCPSGCNFNGDCVDGRCSCFLGFHGHDCSRRSCPSSCSGNGMCLSNGMCECKTGYTGIDCSTAICDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSMLLSSLSVCKNVLGNDISGQHCAPSEPSILQQLEEVVVMPNYHRLFPSGARKLFNIFGSTYCDEAAKRLACWISIQKCDKDGDNRLRVCHSACQSYNLACGASLDCGDQTLFSSKGEGEGQCTGFGEMKLSWFNRLRTSFSWRNSSSRGIFLRHRQL* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3213 851 ProSitePatterns EGF-like domain signature 1. 646 657 IPR000742 -
Lja5g3213 851 Pfam EGF-like domain 630 657 IPR013111 -
Lja5g3213 851 Gene3D Laminin 598 627 - -
Lja5g3213 851 Gene3D Laminin 629 660 - -
Lja5g3213 851 ProSiteProfiles EGF-like domain profile. 626 658 IPR000742 -
Lja5g3213 851 ProSitePatterns EGF-like domain signature 2. 646 657 IPR000742 -
Lja5g3213 851 Pfam Leishmanolysin 165 590 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Lja5g3213 851 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 107 592 - -
Lja5g3213 851 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 1 823 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Lja5g3213 851 PRINTS Leishmanolysin (M8) metalloprotease family signature 239 268 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Lja5g3213 851 PRINTS Leishmanolysin (M8) metalloprotease family signature 392 421 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Lja5g3213 851 Gene3D Leishmanolysin domain 3 433 491 - -
Lja5g3213 851 Gene3D Leishmanolysin domain 4 493 588 - -
Lja5g3213 851 Gene3D Leishmanolysin , domain 2 304 429 - -
Lja5g3213 851 Gene3D - 105 294 - -
Lja5g3213 851 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 1 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3213 Lja-Chr5 62203519 62211665 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3213 5 62203519 62211665 Lja5g3213 5 62203519 62211665 ECH
Lja5g3213 5 62203519 62211665 Lja1g3611 1 44808632 44817565 PCT