Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3207 ATGGGTTGGCTTAGCAGAATTTTTAAAGGCTCTGAACATAAGGTTTCAGAAGGGCATTACTATAAAGAGGATGCAGATTATTACTTGCCTTCAACTTCAGGGGATGTTTGGACTGAGAACAATGATGAAGAAATCGATCGCGCTATTGCACTGTCTCTGGCAGAAGAAAATCAGAAACCAAACCGTGTAAATGACTACAGATCACAATTAGAAGATGACGAACAACTTGCTAGAGCCATAGAAGAAAGCTTAAATTTGGAGCCCCCTCCTAGACATGGAAATGAAAACATGTATCAACCAGCTCATCAACCAGTTCAGTATTTCCCAATGGGATACAGGATTTGTGCTCGCTGCAATATGGAGATTGGTTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCACTGATTATGAGTTCTCCACATCTGGGAACTACCCTTACCATAAACCATGCTATAAAGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATAATACTCCTCGCTGTTGTAGCTGTGAGCGAATGGAGCCACGAGAGGCGGGATATATCCCTCTTAAGGATGGCAGGAAGCTCTGCTTAGAGTGTCTGGATTCTTCTATCATGGATACAAACGAATGTCAACCCCTTTACAATGATATACAGAAATTTTATGAAAGCCTAGATATGAAACTGGATCAGCAAGTTCCGCTACTGTTAGTTGAAAGAGAAGCTCTGAATGAAGCAAGAGAGGGAGAGAAGAATGGTCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTATTTCAAGACGACCAAGACATGGGAAGGGAAATAGGGCAATGGACCAGAGAACACAGCCCTACAAACTGACTGCACGTTGTGATGTGACAGCAATTCTCATTTTATATGGTCTTCCAAGGTTGCTTACTGGGTCAATCCTAGCTCACGAGATGATGCATGCATGGCTGCGGCTAAAAGGTGTTCGAACTCTGAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATATGGTTGGAGTCTGAGCTATCTTCTGCACCAGCCGGCAACTTCGTCTCAACATCATCCTCACCAGCACCATATACATCTAAAAAAAGTAAAAGACCAGATTTTGAAAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTCAATCAGACATCTCCCCTGTTTATGGAGATGGATTTAGGGCAGGTCAAAAAGCTGTGCATAAGTTTGGCCTGCAAAGAACCCTTCACCATATCATGATGACAGGGAGTTTTCCATACTAA 1428 0.4335 MGWLSRIFKGSEHKVSEGHYYKEDADYYLPSTSGDVWTENNDEEIDRAIALSLAEENQKPNRVNDYRSQLEDDEQLARAIEESLNLEPPPRHGNENMYQPAHQPVQYFPMGYRICARCNMEIGYGRYLNCLNAFWHPECFRCRACNLPITDYEFSTSGNYPYHKPCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDNTPRCCSCERMEPREAGYIPLKDGRKLCLECLDSSIMDTNECQPLYNDIQKFYESLDMKLDQQVPLLLVEREALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRHGKGNRAMDQRTQPYKLTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGVRTLSQDVEEGICQVLAHIWLESELSSAPAGNFVSTSSSPAPYTSKKSKRPDFERKLGEFFKHQIQSDISPVYGDGFRAGQKAVHKFGLQRTLHHIMMTGSFPY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3207 475 PANTHER PROTEIN DA1-LIKE 1 475 - -
Lja5g3207 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Lja5g3207 475 Pfam LIM domain 115 169 IPR001781 -
Lja5g3207 475 SMART lim_4 114 166 IPR001781 -
Lja5g3207 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Lja5g3207 475 Pfam Protein DA1 265 470 IPR022087 -
Lja5g3207 475 Coils Coil 63 83 - -
Lja5g3207 475 CDD LIM_DA1 115 167 - -
Lja5g3207 475 PANTHER PROTEIN DA1-RELATED 2 1 475 IPR045218 -
Lja5g3207 475 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Lja5g3207 475 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Lja5g3207 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 195 - -
Lja5g3207 475 Gene3D Cysteine Rich Protein 108 173 - -
Lja5g3207 475 SMART uim 40 59 IPR003903 -
Lja5g3207 475 SMART uim 71 90 IPR003903 -
Lja5g3207 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3207 Lja-Chr5 62128490 62137760 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja5g3207 DA1-like 8.2e-92 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3207 5 62128490 62137760 Lja5g3207 5 62128490 62137760 ECH