Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3204 ATGGCTGTGGACACTCCGCTACTAGATAACAACAACAGCAGCACGCATAGTGATGAGGACGAGAAGCCACTGAGCTTGGTTCGCAGATTCGGGTCCGAGTCGAAGAAGCTGTGGAAGATAGCAGGTCCTGCAATTTTAACAATGTTGTGTCAGTACTCACTTGGCACATTCACCCTCATATTTGCAGGCCATGTGGGAGAGCTCGATCTTGCAGCATTTGCTGTTGAAAACACTTGCATTGCTGGCTTCGCCTTTGGAATCATGTTGGGTATGGGGAGTGCCTTGGAGACTCTCTGTGGACAAGCATTCGGTGCGGGTCAGACCAGGATGTTGGGGGTGTACTTGCAAAGATCATGGGTCATCTTATTTACTACTGCCTTGATTTTGGTCCCTGTATATGTTTGGTCACCTCCCATCTTGAGGCTCATGGGACAAACTACTGAGATCTCAAAAGCTGCTGGAAGATTTGCTTTGTGGATGTTACCACAGTTGTTTGCATATGCTTTCAATTTTCCAATCCAGAAGTTCTTACAGTCACAGAGGAAAGTCCATGTGATGTTACGGATAGCAGCAACTGTCCTGGTGCTACATATATTTTTCAGTTGGCTCCTAATACTGAAACTTGGGTGGGGCTTAATTGGAGCAGCAATTACTCTCAACACATCATGGTGGCTGATTGTCATTGCACAATTTTCGTACATTGTGATCACAAAATCAGATGGTGCTTGGAGTGGATTCTCATGGCTAGCATTTGCAGACTTGTTTGGTTTCGTGAAACTTTCTTTGGCTTCAGCTGTCATGTTATGCTTGGAGATTTGGTACTTGATGATCCTGGTGGTGATAACAGGACGTTTGACAAACCCTCTAATACCTGTTGATGCCATATCTATCTGTATGACCCTCAATGGCTTGGATGGCATGATTGCAATAGGGTTCAATGCAGGAATAAGTGTGAGAGTATCAAATGAACTAGGGGCTGGTAATTTCCGGGCTGTGAGGTTTGCGGTGTGGGTAGTTTCCATCACATCAGTATCCATAGGTGTTCTTGCCATGATTTTAGTTCTTTCAACAAGGGATTACTTTCCTCACTTGTTTACCACAAGTGATGCAGTTGCCAAGGAAACAACTAAGCTTGCTGCTTTGCTTAGTGTCACGGTGCTTCTCAACAGCCTTCAACCAATCTTATCTGGTGTTGCTGTTGGAGCTGGGTGGCAATCTCTTATAGCATACATCAACATTGGGTGCTACTATATTATTGGATTACCAGCAGGGATATTGTTGGGATTCACATTTCATTTTGGAGCAGAGGGTATTTGGTCAGGGTTGATTGGAGGTGTAGTTCTGCAGACCATAATCCTTATAATCGTCACTTCAGTCACCAATTGGAAGAAGGAGGCTGAACAAGCAGAGGGTCGCGTGAAGAAATGGGGAGGATCAATTGCTTATGAACAATGA 1455 0.4467 MAVDTPLLDNNNSSTHSDEDEKPLSLVRRFGSESKKLWKIAGPAILTMLCQYSLGTFTLIFAGHVGELDLAAFAVENTCIAGFAFGIMLGMGSALETLCGQAFGAGQTRMLGVYLQRSWVILFTTALILVPVYVWSPPILRLMGQTTEISKAAGRFALWMLPQLFAYAFNFPIQKFLQSQRKVHVMLRIAATVLVLHIFFSWLLILKLGWGLIGAAITLNTSWWLIVIAQFSYIVITKSDGAWSGFSWLAFADLFGFVKLSLASAVMLCLEIWYLMILVVITGRLTNPLIPVDAISICMTLNGLDGMIAIGFNAGISVRVSNELGAGNFRAVRFAVWVVSITSVSIGVLAMILVLSTRDYFPHLFTTSDAVAKETTKLAALLSVTVLLNSLQPILSGVAVGAGWQSLIAYINIGCYYIIGLPAGILLGFTFHFGAEGIWSGLIGGVVLQTIILIIVTSVTNWKKEAEQAEGRVKKWGGSIAYEQ* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3204 484 PANTHER PROTEIN DETOXIFICATION 33 19 470 - -
Lja5g3204 484 TIGRFAM matE: MATE efflux family protein 43 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g3204 484 PANTHER MULTIDRUG RESISTANCE PROTEIN 19 470 - -
Lja5g3204 484 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g3204 484 Pfam MatE 264 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g3204 484 Pfam MatE 43 203 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g3204 484 CDD MATE_eukaryotic 33 468 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3204 Lja-Chr5 62100621 62107537 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3204 5 62100621 62107537 Lja5g3204 5 62100621 62107537 ECH