Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3197 ATGGCGAAATCCAGCGCCGACGATGTGGAACTCCGGCGAGCTTGCGAGGCTGCAATTGAGGATCCAAAGCAGAAGATCGTCTTGTCTCTCCGCGTCGCCAAGAGCAATGGGATCTTAGGAAAATCTTCCAAGCTTGGTCGCCAAATGGCCAAGCCTAGGGTTCTTGCTCTCTCCACAAATTCAAAAGGTCAGAGGCCGACGGCTTTTCTTCGAGTTTTCAAGTATTCTACTGGAGGAGTTCTTGAACCTGCAAAACTGTACAAGCTAAAGCACCTCTCAAAAGTGGAAGTTATAGCAAATGATCCCAGTGGATGTACATTTACACTGGGATTTGATAACCTTAGGAGCCAGAGCGTGGCTCCTCCTCAATGGACAATGCGCAATACTGATGACAGGAATCGCCTCCTTCTTTGCATCTTGACCATCTGCAAAGATGTTTTGGGCCGCCTTCCTAAGGTTGTTGGTGTAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACATCTGCTGTTTCTACTCAAAGCCACATGCAAGATGGTGGTCCTGTGGCATCTTCTGTGACTGAGAGAGAGTTGAAAGTCAATGTTGAGAAGGAACTTGTCTCTCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGGACTTATGTCATGGGTGTTGGTGAGGCAGAAGAATTTTCTGAAAGGTTGAAGAGAGAACTCCAGGCTCTGGAAGCAGCTAACGTGCATGCCATTTTAGAAAGTGAACCTTTGATAAATGAGGTGTTGCAAGGGCTTGAATCAGCAACGAATTGTGTGGATGATATGGATGAATGGTTAAACGTATTCAATGTGAAACTCCGACACATGAGGGAAGATATTGCATCAATAGAAACCCGCAATAACAACTTGGAAATGCAATCAGTAAATAGCAAATCTCTCATTGAGGAGCTTGATAAGCTTCTTGAGCGATTGCGTGTTCCATCTGAGTATGCAGCATGTTTGACAGGTGGTTCCTTTGATGAAGCTCGAATGCTTCAAAATGTTGAAGCATGTGAATGGTTGACCAGTGCCTTGCGTGGTCTAGAAGGGCCTAATCTAGACCCTTCCTATGCAAACATGAGAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCTTCTGAATTCTTGAGAAATTACTTTGCCAGTCTGGTGGACTTCATGATAAGCGACAAAAGTTACTTTTCTCAGCGGGGACAATTGAAGAGGCCTGATCATGCGGACCTGCGGTACAAGTGCAGGACATATGCACGCCTTTTGCAACATTTGAAGAGTCTTGACAAGAATTGCTTGGGTCCTTTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAGGGAGGCCCGCGAGTTTGCAAATGAACTCCGTGCTAGTACTAAAGCATCTAGAAATCCAACTGTTTGGCTTGAAGGTTCCACAGGTTCTGGTCAGAATGTAAATGCTACCGACACTTCTACAGTCTCTGATGCTTATGCAAAGATGCTCACGATTTTCATCCCACTTCTGGTGGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACTCTTGTTCCTCCAGGAGGTGTCGTTAATGGCAACAAAGCTGGATATGATGATGACGATGATGATTTGGGAATTATGGACATTGATGACAATGACAGCAAATCTGGTAATAATTCTGCAGAGCTTACCGCTTTGAATGAGTCACTTCAGGATTTACTAGATGGAATTCAAGAAGACTTCTATGCTGTTGTGGACTGGGCATACAAAATTGATCCTTTACGCTGCATATCAATGCACGGAATAACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCTGCAGGATTTGTACGTCTTTTGCTTGGTGACCTGGAGTCGCGGATATCTGCACAGTTCAGTCGTTTTGTTGATGAAGCTTGCCACCAAATTGAAAGAAATGAACGCAATGTTCGCCAAATGGGTGTCCTATCCTACATTCCCAGATTTGCAACCCTTGCAACTCGAATGGAGCAGTACATCCAGGGACAGTCTAGGGATTTGGTTGACCAAGCATACACAAAATTTGTTAGTGTAATGTTTGCGACTTTGGAAAAAATTGCTCAAACAGATCCAAAGTATGCAGATATTTTTCTTTTTGAGAACTATGCCGCTTTTCAGAATAGTTTATATGACCTTGCCAACATTGTGCCCACTTTGGCCAAGTTTTATCATCAAGCTAGTGAAGCCTATGAACAAGCTTGTACGCGCCATATTAGCATGATTATCTACTATCAATTTGAGCGTCTTTTCCAATTTGCACGAAGGATTGAGGACTTGATGTTCACTGTTGCACCTGAAGAGATTCCTTTCCAGCTTGGGCTGTCAAAAATGGATCTACGGAAGATGTTAAAATCCAGTTTATCTGGGGTTGACAAATCCATTACGGCTATGTATAAGAAACTACAGAAGAATTTAACTTCCGAGGAACTGTTACCTTCCTTATGGGACAAATGCAAGAAGGAGTTTCTTGATAAGTACGAAAGTTTTGCCCAACTTGTGGCTAAGATTTACCCTACTGAGACAATCCCATCTGTAGCGGAGATGAGAGACCTTTTAGCTTCCATGTAA 2655 0.4343 MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSSKLGRQMAKPRVLALSTNSKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTLGFDNLRSQSVAPPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGVDVVEMALWAKENTSAVSTQSHMQDGGPVASSVTERELKVNVEKELVSQAEEEDMEALLGTYVMGVGEAEEFSERLKRELQALEAANVHAILESEPLINEVLQGLESATNCVDDMDEWLNVFNVKLRHMREDIASIETRNNNLEMQSVNSKSLIEELDKLLERLRVPSEYAACLTGGSFDEARMLQNVEACEWLTSALRGLEGPNLDPSYANMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKAGYDDDDDDLGIMDIDDNDSKSGNNSAELTALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISAQFSRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSVMFATLEKIAQTDPKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGVDKSITAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPTETIPSVAEMRDLLASM* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3197 884 Pfam Exocyst complex component Sec3 572 867 IPR019160 GO:0000145|GO:0006887
Lja5g3197 884 Pfam Exocyst complex component Sec3 224 484 IPR019160 GO:0000145|GO:0006887
Lja5g3197 884 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 884 - -
Lja5g3197 884 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Lja5g3197 884 PANTHER SEC3/SYNTAXIN-RELATED 1 884 - -
Lja5g3197 884 Coils Coil 281 301 - -
Lja5g3197 884 Coils Coil 221 248 - -
Lja5g3197 884 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Lja5g3197 884 Coils Coil 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3197 Lja-Chr5 61993863 62006970 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3197 5 61993863 62006970 Lja5g3197 5 61993863 62006970 ECH
Lja5g3197 5 61993863 62006970 Lja1g3625 1 45031931 45055183 PCT