Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3194 ATGGCAGTGAGAGAGGACAGAGACATGAACAACAACATCAACCACATCCCACGCCCCCAATTCATGCACTCCGAGCCGCGGCTCTCCACGACGGAGCCGCTAACTGACATTGATGACTTCGCAATGCGAAGCAGCAGTGCAGCATCACCGATGAGCCCTTACTACTACGACCCGAGCAGGTTGAGCGGTGAAGGCTCACCGATGATGATGTCACCGTGGAATCAGACCGCCAATTCCCCGTTCTCGAAAACACAATGGTCGTCGTCAAACTACGACGACGTTGTGGTTCCGCAGAACGGGTTAATTGGGTCCCTCGTTCGCGAGGAAGGACACATTTACTCCCTCGCTGCAACCGGCGACCTTCTCTACACCGGCTCCGACAGCAAGAACATCCGCGTGTGGAAGAATCTGCAAGAGTATTGCGGATTCAAATCCAACAGCGGGTTGGTGAAATCGATCATCATCGCCGGCCAGAAAATCTTCACCGGCCACCAGGACGGGAAGATCAGGGTGTGGAAGGTTTCTGTGAAGAATCCGAGCGTGCACAAACGCGCCGGCACGTTGCCAACGCTGAAGGACATTTTCAAGAGCTCGATTAAGCCGAGCAACTACGTGGAGGTGCGGCGCCACCGTACTGCGCTGTGGATCAAGCATTCCGACGCCGTTTCGTGCCTGAGTTTGTCGCACGATAAGACGTTCTTGTATTCGGCGTCGTGGGACAGGACGATCAAGATTTGGAGGATTTCGGATTCGAAGTGCTTGGAGTCGATTCCGGCTCACGACGACGCTGTGAATGCGGTGGTTAGTGGTGCCGAAGGGGTGGTTTTCTCTGGGTCCGCGGATGGGACGGTGAAGGTGTGGAAGAAGGAGACGCGTGGAAAGGGAATCAAGCACGCGCCGGTGAAGACGCTGTTGAAGCAGGAATGTGCCGTTACGGCCTTAGCGGTGGACCCCACAGGCTCTATTGTATACTGTGGGGCCTCAGATGGATTGGTTAATTTTTGGGAACGTGAGAAGGACTACGCGCATGGAGGGGTTTTGAAGGGTCACAAGCTCGCCGTGTTGTGTCTCTCATCCGCGGGGACATTGGTGTTCAGCGGGTCTGCGGACAAGACCATATGTGTGTGGCGGAGGGATGGGATGATTCACACGTGCGTGTCAGTGCTAACAGGCCACGAGGGTCCTGTGAAGTGCCTTGCAGTGGAGGAGGACCGTGAGTCAGCTGCAAGGGGTGACCAACGGTGGGTGGTGTATAGTGGCAGCTTGGATAATTCAGTGAAGGTGTGGAGTGTCTCCGAGATGCTACCCCAACAACACTGCATGATGGCCTACGATGCAGACTCAGCTCCTTCTGAGTCTGATGGCAGCTACTCTTCAGGTCGGGCCAGCCGCAACAAGAGGAGCTGA 1407 0.5565 MAVREDRDMNNNINHIPRPQFMHSEPRLSTTEPLTDIDDFAMRSSSAASPMSPYYYDPSRLSGEGSPMMMSPWNQTANSPFSKTQWSSSNYDDVVVPQNGLIGSLVREEGHIYSLAATGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKSIIIAGQKIFTGHQDGKIRVWKVSVKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHRTALWIKHSDAVSCLSLSHDKTFLYSASWDRTIKIWRISDSKCLESIPAHDDAVNAVVSGAEGVVFSGSADGTVKVWKKETRGKGIKHAPVKTLLKQECAVTALAVDPTGSIVYCGASDGLVNFWEREKDYAHGGVLKGHKLAVLCLSSAGTLVFSGSADKTICVWRRDGMIHTCVSVLTGHEGPVKCLAVEEDRESAARGDQRWVVYSGSLDNSVKVWSVSEMLPQQHCMMAYDADSAPSESDGSYSSGRASRNKRS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3194 468 Pfam WD domain, G-beta repeat 109 135 IPR001680 GO:0005515
Lja5g3194 468 Pfam WD domain, G-beta repeat 384 430 IPR001680 GO:0005515
Lja5g3194 468 Pfam WD domain, G-beta repeat 345 376 IPR001680 GO:0005515
Lja5g3194 468 Pfam WD domain, G-beta repeat 252 288 IPR001680 GO:0005515
Lja5g3194 468 Pfam WD domain, G-beta repeat 307 335 IPR001680 GO:0005515
Lja5g3194 468 Pfam WD domain, G-beta repeat 218 246 IPR001680 GO:0005515
Lja5g3194 468 SUPERFAMILY WD40 repeat-like 107 438 IPR036322 GO:0005515
Lja5g3194 468 MobiDBLite consensus disorder prediction 13 27 - -
Lja5g3194 468 Gene3D - 205 297 IPR015943 GO:0005515
Lja5g3194 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Lja5g3194 468 Gene3D - 298 467 IPR015943 GO:0005515
Lja5g3194 468 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 452 IPR045182 -
Lja5g3194 468 Gene3D - 85 193 IPR015943 GO:0005515
Lja5g3194 468 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Lja5g3194 468 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Lja5g3194 468 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Lja5g3194 468 SMART WD40_4 250 288 IPR001680 GO:0005515
Lja5g3194 468 SMART WD40_4 340 377 IPR001680 GO:0005515
Lja5g3194 468 SMART WD40_4 98 135 IPR001680 GO:0005515
Lja5g3194 468 SMART WD40_4 382 430 IPR001680 GO:0005515
Lja5g3194 468 SMART WD40_4 297 336 IPR001680 GO:0005515
Lja5g3194 468 SMART WD40_4 136 173 IPR001680 GO:0005515
Lja5g3194 468 SMART WD40_4 208 247 IPR001680 GO:0005515
Lja5g3194 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 376 IPR001680 GO:0005515
Lja5g3194 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 288 IPR001680 GO:0005515
Lja5g3194 468 PANTHER PROTEIN JINGUBANG 19 452 - -
Lja5g3194 468 MobiDBLite consensus disorder prediction 446 468 - -
Lja5g3194 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 252 - -
Lja5g3194 468 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g3194 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 336 IPR001680 GO:0005515
Lja5g3194 468 CDD WD40 109 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3194 Lja-Chr5 61953114 61955666 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3194 5 61953114 61955666 Lja5g3194 5 61953114 61955666 ECH
Lja1g4811 1 65505747 65510409 Lja5g3194 5 61953114 61955666 PCT