Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3191 ATGTCTATCTCTAATTCACACCACCCAGTAATGCAAACCTTGTTCTCACCATTTTCAGAACCAGACCTCTCTTTGAACATAAGCCCTCCCTCTATTTCTGAAGCAAAAGCATCAGTTGGATGTAAAGCACTTTACAATAACGATATGTGTTCATTATCAACCTCTGATTCAGCTGGAAGTAGTGAAAGCGAGTTGAGCCATGAGAATAATGGCTTCAACAACCTCTGTCCTCCTCGTGAGCCCACATTGAGATTGGGCTACGGAGCCGTGGATTTGAATCCCCACTATTCAGTTCAAGGAGGAGGCTTGAGAAACTTCAACCACCACCACCATCACCTCCAACCTCGCGGCCACCCCGTCTATGGCCGGGAGTTCAAGCGCAATGCAAGGGTCGTTAATGGTGGTAAAAGAAGTGTTAGAGCTCCCAGGATGAGGTGGACAACCACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTACTTGGTGGTCATGAAAGAGCAACACCAAAGTCTGTGTTGGAGCTAATGAATGTGAAGGATCTAACCCTTGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACCGACAAAGGCATTACAGAAGGAGGTCATGGGCAGACAGATATTGGGTTGAGCCAAAGGCCAGGGATTGTTCCTCTGCATGGAGCATCATCAGCAGTACCCAATTTATTGCCTCAGAAGTCCCACATCAGAACATCGTGGCAATCATCATCAATAGAGACAAATACAAACAATAGCGGACAAAACTCCGAAATTGGTTTGACGTATTCTCGTCTCATGAAAGGATCAAATGATACCATGGGGAATGAGCATAATTATGCTGGCATGTCAAATTGCATGAAGGAGGGTTTGGATTCTATCCCTTTGTCACGTTCAGAGACTATGATTGACTTAGAATTCACCCTTGGAAGGCCCACTTGGCAAACAGAGCATGCCGAACCATCAAGAAGAGAGTTAACTCTTCTCAAGTGTTAA 1008 0.4544 MSISNSHHPVMQTLFSPFSEPDLSLNISPPSISEAKASVGCKALYNNDMCSLSTSDSAGSSESELSHENNGFNNLCPPREPTLRLGYGAVDLNPHYSVQGGGLRNFNHHHHHLQPRGHPVYGREFKRNARVVNGGKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGITEGGHGQTDIGLSQRPGIVPLHGASSAVPNLLPQKSHIRTSWQSSSIETNTNNSGQNSEIGLTYSRLMKGSNDTMGNEHNYAGMSNCMKEGLDSIPLSRSETMIDLEFTLGRPTWQTEHAEPSRRELTLLKC* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3191 335 MobiDBLite consensus disorder prediction 53 73 - -
Lja5g3191 335 SUPERFAMILY Homeodomain-like 139 196 IPR009057 -
Lja5g3191 335 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 332 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lja5g3191 335 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 6 332 - -
Lja5g3191 335 Pfam Myb-like DNA-binding domain 143 194 IPR001005 -
Lja5g3191 335 Gene3D - 141 198 - -
Lja5g3191 335 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 142 195 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3191 Lja-Chr5 61925430 61929325 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja5g3191 Myb_DNA-binding 1.5e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3191 5 61925430 61929325 Lja5g3191 5 61925430 61929325 ECH
Lja5g3191 5 61925430 61929325 Lja1g4207 1 53731805 53733803 PCT