Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3185 ATGGCCTGTGACTGTGAGGGGATGTTGAATGTGAGAAGGCCTCACTTCTATGAGCTTTATTCCCATGCCTCTTCCTCTCAGACACTGAAACTTCCAGATGGCTTCGTTGGTCGAATGGAGGGAAGGACGAGCGGATTAGTTTCCTTAACTGGTCCAAGTGGAAATACTTGGCAAGTTCGATTGATTAAGCAGGACAATGAGCTATTCTTCCATAATGGGTGGTCAACATTTGTGGGAGATCATCTTTTGGAATGTGGTGACCTTTTGGTTTTCAGATACGAGGGTCACTTACAATTTACTGTGCAAGTATTCGATAAGAATGCATGTGAGAAAGAAGCAGCATTTCATTCTAAATGCAGCCAAAATTCATGCAACTTTGATAATATTAAAGGGCAAAAAAGGGACAGTGAGGAGAACTCTTCTTTGGATGTTGTTGATGGTATTCCGAAGAAAATGAGACGTAGTGCCATGGAGAACCATGGACTGGAGCTGGCTATAGTTGGTAAAGAACTTTCCAATTATGAGGTAGTAAAACCAATTAGTATGTTCAGAGAAACTGAAGAAACCTCCAACAAATGTTCAACTAGTGATGTCCCTGTGCCTTTTCACATGGAAAATAGCAATGAAGAGGCAGGCATCCATTGTAGAAGTGGCAAGGAAGATGATCATTATTATCTCAGTGGAGTTTCACCATCAAAATTATCAGCGCATGATGAGAAGAAAGTAGCTCAGTCATTTACTTCCCCATTTCCACATTTTGTTAGAATAATGAAAAGCTTCAATGTCAGCGGTTCATATACTTTGAATATCCCATATCAATTTTCGATGGCTCATCTTCCAAACTGTAAGATAAAGATTATACTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTGCCAACGACTAGAGTGCATACAAGTCACACTCTGTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATTAAGGTTGGAGATATCTGCATTTTTGAACTTATACATGAGTGTGAATTACGTGTTCACATTGCTAGGGTTGGAAAAGATGAACTAGGCTACCAGGTTGGAAAACTAGAGTTCAGTATGCCTAGTGCAGGAAATGCCGTCACTTGCCATAAAACTTCCAAATATATGCTAAAGAATCCTAAAGTCAGTTCAAAACGCATAAGCAAAGTTGATCTATCAGACAAAAAGTGGTCAAAGATTGGTCGGGAAGCTGTTTTATCCATTGATTTAAAGAAATCTGAAAGAGCTTCAAGTACTTCGAAGAAGATGGGACTTTCGCCTCAGCCAAAAGCTTCCCATAAAAAGTCGGCTATTCAGAGGAGACATCGGGTTGAAGATGAATTAAGCTCGCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTAGATGAACAGAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCTAATTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATATCAGTTCTCCGCCGCACATCTCCCAGCCTACAAAACCGAAATCATGCTTCGCAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCAGGACAGTTCACACCTTTTGTGGGGGATGGGTCGCCTTTGTTCGTGACAATGACATCAATTTTGGAGACACGTGTATTTTTGAACTCGTTGCACAGTGTGAGATGCAGGTTTATATTTCTGGAGTTGGAAAAGAAGGGCTTGATCATCATAATGGGCATGCGAAACTTAATAGATTAGCCTCTGTTCCATCTACCTGCTAA 1806 0.4059 MACDCEGMLNVRRPHFYELYSHASSSQTLKLPDGFVGRMEGRTSGLVSLTGPSGNTWQVRLIKQDNELFFHNGWSTFVGDHLLECGDLLVFRYEGHLQFTVQVFDKNACEKEAAFHSKCSQNSCNFDNIKGQKRDSEENSSLDVVDGIPKKMRRSAMENHGLELAIVGKELSNYEVVKPISMFRETEETSNKCSTSDVPVPFHMENSNEEAGIHCRSGKEDDHYYLSGVSPSKLSAHDEKKVAQSFTSPFPHFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELIHECELRVHIARVGKDELGYQVGKLEFSMPSAGNAVTCHKTSKYMLKNPKVSSKRISKVDLSDKKWSKIGREAVLSIDLKKSERASSTSKKMGLSPQPKASHKKSAIQRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFSSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEIMLRNSRGECWTVNSVPDAKGRTVHTFCGGWVAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHHNGHAKLNRLASVPSTC* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3185 601 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Lja5g3185 601 CDD B3_DNA 480 574 IPR003340 GO:0003677
Lja5g3185 601 SUPERFAMILY DNA-binding pseudobarrel domain 475 576 IPR015300 -
Lja5g3185 601 SUPERFAMILY DNA-binding pseudobarrel domain 246 347 IPR015300 -
Lja5g3185 601 Gene3D - 234 349 IPR015300 -
Lja5g3185 601 Gene3D - 467 577 IPR015300 -
Lja5g3185 601 ProSiteProfiles B3 DNA-binding domain profile. 253 349 IPR003340 GO:0003677
Lja5g3185 601 CDD B3_DNA 21 105 IPR003340 GO:0003677
Lja5g3185 601 PANTHER B3 DOMAIN-CONTAINING 457 594 - -
Lja5g3185 601 ProSiteProfiles B3 DNA-binding domain profile. 482 578 IPR003340 GO:0003677
Lja5g3185 601 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 456 - -
Lja5g3185 601 SMART B3_2 16 107 IPR003340 GO:0003677
Lja5g3185 601 SMART B3_2 253 349 IPR003340 GO:0003677
Lja5g3185 601 SMART B3_2 482 578 IPR003340 GO:0003677
Lja5g3185 601 CDD B3_DNA 251 347 IPR003340 GO:0003677
Lja5g3185 601 Pfam B3 DNA binding domain 253 347 IPR003340 GO:0003677
Lja5g3185 601 Pfam B3 DNA binding domain 482 569 IPR003340 GO:0003677
Lja5g3185 601 Pfam B3 DNA binding domain 21 107 IPR003340 GO:0003677
Lja5g3185 601 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Lja5g3185 601 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 457 594 - -
Lja5g3185 601 PANTHER B3 DOMAIN-CONTAINING 1 456 - -
Lja5g3185 601 MobiDBLite consensus disorder prediction 419 445 - -
Lja5g3185 601 Gene3D - 7 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3185 Lja-Chr5 61815319 61825990 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja5g3185 B3 2.7e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3185 5 61815319 61825990 Lja5g3185 5 61815319 61825990 ECH