Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3172 ATGGCACTAATGTTATCAACAAAATCACTATTGTGGTTGTTATTTGTGGTGGTGTCCCACTTCACCATCTCATGCAACGCCGACCAACAAGGCAAATACCTCTACAAGTTCATTCAGTCACGAAGGTCTCATAAGAAGTCTTCACAGGGAGAAGCTTATGGTGTTAATGGTATGGATCATGAATATTTTTCTCAATCACATGTTGAACAACATGCGTCGAATCAGGAACTGAACCAGATTATTAGTTTTGATCAATGTATTTCTTTTTTGCCAACCTTATCCATTTTCTCTGGTTCCGTACCTGGGTCAAAGGATGCTGATAAGGTGAAGGCTTTGCCGGGACAACCCCAAGGGGTGGATTTTGATCAGTATGCAGGGTATGTCACAGTGGATGCCAAGGCGGGGAGATCATTGTTCTATTACTTTGTGGAGTCACCTCACAATTCTTCCACCAAGCCTCTTGTTCTATGGCTGAATGGAGGACCAGGGTGCTCTTCCTTTGGGTATGGAGCCATGCAAGAATTGGGACCTTTTAGAGTCAATAGTGATGGAAGAACACTTCACATAAATGAACATGCATGGAATAATGTGGCAAATGTTATTTTCCTAGAGTCTCCAGTTGGAGTTGGCTTTTCATATTCAAACAATTCATTACGTGACTCAAAAAATGGTGATCACAGAACAGCCATGGATTCATACACTTTCCTTCTTAACTGGCTGGAGAGATTCCCACAGTATAAAACAAGAGACCTGTTCATAACTGGTGAAAGTTATGCTGGCCATTATGTCCCTCAGCTTGCTCACATTATCCTATCAAAGAATAAGTTACATAAAAGTCACACAGTGATAAACTTGAAAGGGATCGCGATTGGAAATGCCTGGATAGATGATAATTATTGTTCAAAGGGAATGTATGACTACTTCTGGACGCATGGTCTGATCTCTGACGAAACCCATAAAGGACTTCAAAAACATTGTAACTTTAAGCATGCCAACCTTACAAGTGAATGCAACAAGTATGCAGACAGAGTAGATGAAGAGCTAGGAAATATTGACATATACAACATATATGCTCCACTTTGCAATTCATCAGAAAGTCATGCCACCTACACTGGCAACGACATTGACCCTTGTTCTGATGATTATACCACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGCTCTTCATGCTAAGGCAACAAAATGGTCTCCTTGCAACGAAATGGATTGGACAGATAGTCCAACAACTATTCTGCCCATTATAAAACAGCTAATATCAAGTGGTCTAAGAACTTGGATATTCAGTGGCGACACAGATGGTCGCGTTCCCATAACATCTTCAAGATATTCTGTGAATTCCTTGAAACTTCACGTGGACACAACATGGCGTCCATGGGGCTCTGGCAATGAGGTTGGAGGATATGTTGTTGGGTATAAAGGTCTCACATTCGTTACAATAAGAGGAGCTGGTCACACGGTTCCGAGCTACCAGCCAGAGAGAGCACTAACTATGATCTCTTCTTTTCTCCATGGAAAACTTCCTCCGAAATTAATCTCTTAA 1563 0.4139 MALMLSTKSLLWLLFVVVSHFTISCNADQQGKYLYKFIQSRRSHKKSSQGEAYGVNGMDHEYFSQSHVEQHASNQELNQIISFDQCISFLPTLSIFSGSVPGSKDADKVKALPGQPQGVDFDQYAGYVTVDAKAGRSLFYYFVESPHNSSTKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGRTLHINEHAWNNVANVIFLESPVGVGFSYSNNSLRDSKNGDHRTAMDSYTFLLNWLERFPQYKTRDLFITGESYAGHYVPQLAHIILSKNKLHKSHTVINLKGIAIGNAWIDDNYCSKGMYDYFWTHGLISDETHKGLQKHCNFKHANLTSECNKYADRVDEELGNIDIYNIYAPLCNSSESHATYTGNDIDPCSDDYTTTYLNLPEVQEALHAKATKWSPCNEMDWTDSPTTILPIIKQLISSGLRTWIFSGDTDGRVPITSSRYSVNSLKLHVDTTWRPWGSGNEVGGYVVGYKGLTFVTIRGAGHTVPSYQPERALTMISSFLHGKLPPKLIS* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3172 520 ProSitePatterns Serine carboxypeptidases, serine active site. 253 260 IPR018202 GO:0004185
Lja5g3172 520 PRINTS Carboxypeptidase C serine protease (S10) family signature 203 213 IPR001563 GO:0004185|GO:0006508
Lja5g3172 520 PRINTS Carboxypeptidase C serine protease (S10) family signature 482 495 IPR001563 GO:0004185|GO:0006508
Lja5g3172 520 PRINTS Carboxypeptidase C serine protease (S10) family signature 190 202 IPR001563 GO:0004185|GO:0006508
Lja5g3172 520 PRINTS Carboxypeptidase C serine protease (S10) family signature 239 264 IPR001563 GO:0004185|GO:0006508
Lja5g3172 520 SUPERFAMILY alpha/beta-Hydrolases 109 513 IPR029058 -
Lja5g3172 520 PANTHER CARBOXYPEPTIDASE 75 514 - -
Lja5g3172 520 ProSitePatterns Serine carboxypeptidases, histidine active site. 482 499 IPR033124 GO:0004185
Lja5g3172 520 Gene3D - 418 512 - -
Lja5g3172 520 Pfam Serine carboxypeptidase 113 512 IPR001563 GO:0004185|GO:0006508
Lja5g3172 520 Gene3D alpha/beta hydrolase 103 363 IPR029058 -
Lja5g3172 520 Gene3D - 378 409 - -
Lja5g3172 520 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 75 514 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3172 Lja-Chr5 61645316 61651354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3172 386 513 Calmodulin-binding Proteins AT2G22960 30.827 4.81e-14 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3172 5 61645316 61651354 Lja5g3172 5 61645316 61651354 ECH