Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3170 ATGCAACAATCCAACGGCTCTGATTCGTCGACGGAACCGAACAACAAGCAGCGGTCAGCGGCGGTGGCGGTGCCGCAGCAGTGGGTGCCGATGCAGTATCCGGCTATGGTAATGCCGCACCACATGTTACCGCCGCCGCCTCAACATTACCCCCCGCCGCCGCCGCCTTACGTGCCTTACCATCACCACCACCACCAGTTCGCGCCGCCACATCAGCAGCATCACCATGGATCCAACAATAACATCGAGAACAAAACCGTTTGGGTTGGAGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATCAAAGTTATTCGCAATAAGCAGACTGGTTTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACACGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAGTCTTGATGCCCAATACAGACCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACTGGGGAGAAGACTTCAGATAATGTTTCTGATCTTTCAATTTTCGTAGGAGATTTAGCTGCAGATGTTACGGATAGTTTGTTACATGAAACATTTGCTAGTGTATACCCTTCAGTCAAAGCCGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCGAAAGGCTATGGTTTCGTCAGGTTTGGCGATGATAATGAGAGATCCCAGGCTATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGACCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGGCCAGTCAAATGGCACGTCCAGCCAACCTGAATCAGATTCCACAAATACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGAAGAAGATCTTAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTGGGGAAAGGGTGTGGTTTTGTCCAGTTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACAATTGGAAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGATTAGAATGGATTTCGGCAGTCCCTGGGGAGGGGCATATTATGGGGCACCAGTTTATGATGGCTATGGATATGCTTTGCCGCCACCTCATGATCCAAGAATATATGCTGCTGCTTATGGAGCGTACCCCATTTACGGAGGCCACCAACAGCAAGTAAGCTGA 1242 0.4799 MQQSNGSDSSTEPNNKQRSAAVAVPQQWVPMQYPAMVMPHHMLPPPPQHYPPPPPPYVPYHHHHHQFAPPHQQHHHGSNNNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGYALPPPHDPRIYAAAYGAYPIYGGHQQQVS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3170 413 SUPERFAMILY RNA-binding domain, RBD 173 272 IPR035979 GO:0003676
Lja5g3170 413 Gene3D - 259 362 IPR012677 -
Lja5g3170 413 MobiDBLite consensus disorder prediction 258 289 - -
Lja5g3170 413 CDD RRM3_NGR1_NAM8_like 282 353 - -
Lja5g3170 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 249 IPR000504 GO:0003723
Lja5g3170 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 150 IPR000504 GO:0003723
Lja5g3170 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 348 IPR000504 GO:0003723
Lja5g3170 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Lja5g3170 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 21 412 - -
Lja5g3170 413 Gene3D - 84 164 IPR012677 -
Lja5g3170 413 Gene3D - 177 253 IPR012677 -
Lja5g3170 413 SUPERFAMILY RNA-binding domain, RBD 50 166 IPR035979 GO:0003676
Lja5g3170 413 MobiDBLite consensus disorder prediction 253 290 - -
Lja5g3170 413 CDD RRM2_SECp43_like 177 256 - -
Lja5g3170 413 SUPERFAMILY RNA-binding domain, RBD 272 383 IPR035979 GO:0003676
Lja5g3170 413 SMART rrm1_1 284 351 IPR000504 GO:0003723
Lja5g3170 413 SMART rrm1_1 86 161 IPR000504 GO:0003723
Lja5g3170 413 SMART rrm1_1 179 253 IPR000504 GO:0003723
Lja5g3170 413 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 21 412 - -
Lja5g3170 413 CDD RRM1_SECp43_like 86 166 - -
Lja5g3170 413 MobiDBLite consensus disorder prediction 1 22 - -
Lja5g3170 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 165 IPR000504 GO:0003723
Lja5g3170 413 MobiDBLite consensus disorder prediction 58 77 - -
Lja5g3170 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 355 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3170 Lja-Chr5 61618504 61623255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3170 87 363 Eukaryotic Initiation Factors Gene Family AT4G34110 26.950 1.03e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3170 5 61618504 61623255 Lja5g3170 5 61618504 61623255 ECH
Lja5g3170 5 61618504 61623255 Lja1g4179 1 53228156 53232429 PCT