Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3163 ATGGAGAAAACAAATTCATCCCTTGAACAAATTCAGCCCCCTACTTATGGGAACTTAGTAACCATTCTTAGCATCGATGGTGGTGGTATTCGAGGCATAATCCCTGCGACAATTCTTGAGTTCCTTGAATCTCAGCTTCAGGAGTTGGATGGTGAGGATGCAAGGCTTGCAGACTACTTTGATGTGATATCAGGAACAAGTACAGGGGGTCTTGTAACCGCTATGTTAAGTGCTCCAGATAAAAATAATCGTCCACTTTTTGCTGCCAAAGATATCAAGCCCTTTTACATGGATCACTGCCCAAGTATATTTCCACAACACAGAGGCTTCTGTGGGACTATGTTAGCAAAGGTGATAAGAACTCTTGGAGGACCCAAATATGATGGAAAATACCTCCATTGGGTTGTGGGAGAGACACTTGGAGACATTCGCTTGCATGAGACTCTCACCAATGTTGTCATTCCCACTTTTGACATCAAGTGTTTGCAGCCAATTATTTTCTCATCTTATAAGCTTAAGATGAACCCTTGCATGGATGCAAAACTCTCAGACATATGCATCAGCACTTCTGCTGCACCTACTTATCTCCCTGCTCACAACTTCAAGAACCAAGATTCTAAAGGGAACGTGCACGAATTCAACCTCATTGATGGTGGTGTTTGTGCAAATAACCCGACTTTAGTTGCCATGAACGAAGTAACAAGGCAAATCATTGATGATAATCCGGATTTCTTTCCAATGAAGCCTCTTGAATATGGTCGCTTCCTAATAATTTCATTAGGTACAGGGACAGCAAAAAATGAGGAAAAATTTGATGCAAAAATGGCAGCTAAATGGGGGCTATTAGATTGGCTAACCCATGGTGGTTGTACTCCTTTGATCGATGTTTTTACTCAATCGAGTGGAGATATGGTGGATTTCCATTTATCTACTATCACTCAAGCTCTTCATTCAGAAGATAATTATCTTCGAATACAGGATGACACATTGATGGGAACTGATTCTTCAGTGGACATTGCTACAAAAGAGAACTTGGGAAGATTGTGTCAAATTGGTGAAAAGCTATTAAAGAAACCTGTCTCTAGGGTCAATTTGGAAAATGGTCATTTTGAGCCGCTGAAAAATGGAGAAACCAATGAAGATGCTCTCAAAAGGTTGGCAAAAATACTTTCACAAGAGAGAAGACTCCGCGAAATGAGATCTCCACACACAAATAAAATGGCCTTTTAA 1230 0.4065 MEKTNSSLEQIQPPTYGNLVTILSIDGGGIRGIIPATILEFLESQLQELDGEDARLADYFDVISGTSTGGLVTAMLSAPDKNNRPLFAAKDIKPFYMDHCPSIFPQHRGFCGTMLAKVIRTLGGPKYDGKYLHWVVGETLGDIRLHETLTNVVIPTFDIKCLQPIIFSSYKLKMNPCMDAKLSDICISTSAAPTYLPAHNFKNQDSKGNVHEFNLIDGGVCANNPTLVAMNEVTRQIIDDNPDFFPMKPLEYGRFLIISLGTGTAKNEEKFDAKMAAKWGLLDWLTHGGCTPLIDVFTQSSGDMVDFHLSTITQALHSEDNYLRIQDDTLMGTDSSVDIATKENLGRLCQIGEKLLKKPVSRVNLENGHFEPLKNGETNEDALKRLAKILSQERRLREMRSPHTNKMAF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3163 409 SUPERFAMILY FabD/lysophospholipase-like 18 367 IPR016035 -
Lja5g3163 409 Gene3D Cytosolic phospholipase A2 catalytic domain 9 402 - -
Lja5g3163 409 PANTHER XYLOSE ISOMERASE 1 406 - -
Lja5g3163 409 Pfam Patatin-like phospholipase 23 230 IPR002641 GO:0006629
Lja5g3163 409 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 230 IPR002641 GO:0006629
Lja5g3163 409 CDD Pat17_isozyme_like 17 368 - -
Lja5g3163 409 PANTHER PATATIN 1 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3163 Lja-Chr5 61497058 61499446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3163 11 404 Miscellaneous Gene Families AT2G26560 65.482 0.0 530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3163 5 61497058 61499446 Lja5g3163 5 61497058 61499446 ECH