Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3153 ATGTCTACCACCACCAGGAATGAGCAGCACCACCAGACGGTTCCTCTTTCGGTGTTGCTGAAGCGTGAATTGGCGAGTGAGAGGATTGAGAAGCCTGAGATTGTTCATGGTCAAGCGGGGCAGAGTAAGAAAGGGGAGGATTTCACGCTGCTCAAGGCCGAGTGCCAGAGGATGGTCGGTGATGGAGTCTCTACGTATTCCGTTTTTGGGCTATTTGACGGACACAATGGATCTGCTGCTGCTATTTATACTAAGGAGAATCTGCTAAATAATGTTTTAGGCGCCATTCCTTCAGATCTTAACCGAGATGAGTGGATAGCAGCATTGCCTAGAGCTATGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGCACAAAAATCAGGAACAACTGTCACCTTTGTGATTATAGAAGGATGGGTTGTAACAGTTGCGTCAGTTGGTGATTCTCGTTGCGTACTTGAATCTTCTGATGGTGGAATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGATGCGCATCACCTCAAGTGGGGGTGAGGTTGGTCGGCTAAATACTGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGATTGTGTCTTTCAAGATCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCGCATGTAAAGCAAGTGAAGCTGTCCACTGCTGGAGGCCGGCTTGTTATCTGCAGTGATGGTGTTTGGGATTCTTTACCTGCAGAAGTGGCTCTTGATTGTTGTCGGGGCATGTCAGCCGAGGCTGCTGCACCACATATTGTTAAAGAAGCTTTACAAGCAAAGGGACTTAGAGATGATACTACTTGCATCGTCGTTGATATATTACCTCAGGAGAAGCCACCTGTATCTGTGCCACTACAAAAGAAGCCAGTAAAAGTAATGCTCAAGTCCATGTTTCGTAAAAAGTCTTCTGAATCATCTTCTTATATGGACAAAGAATACTTAGAGCCAGATGTAGTAGTGGAACTGCATGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTAGATACTAAATATCCACTCTGCAACATGTTCAAGTTGTTCATGTGTGCAGTATGTCAAGTAGAGATAAAACCGGGAGAGGGTATTTCGATACACGAGGGCTTGCCCAACGTGAGAAAATTGCGTCCCTGGGATGGACCTTTCCTTTGTTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAGGGGAAAAGACAATCAGATAGACTTAGCAGTGGAAGTGAATGA 1296 0.4506 MSTTTRNEQHHQTVPLSVLLKRELASERIEKPEIVHGQAGQSKKGEDFTLLKAECQRMVGDGVSTYSVFGLFDGHNGSAAAIYTKENLLNNVLGAIPSDLNRDEWIAALPRAMVAGFVKTDKDFQEKAQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGGIYYLSADHRLETNEEERMRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPHVKQVKLSTAGGRLVICSDGVWDSLPAEVALDCCRGMSAEAAAPHIVKEALQAKGLRDDTTCIVVDILPQEKPPVSVPLQKKPVKVMLKSMFRKKSSESSSYMDKEYLEPDVVVELHEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEIKPGEGISIHEGLPNVRKLRPWDGPFLCSSCQEKKEAMEGKRQSDRLSSGSE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3153 431 Gene3D - 34 303 IPR036457 -
Lja5g3153 431 CDD PP2Cc 40 297 IPR001932 -
Lja5g3153 431 Pfam Protein phosphatase 2C 42 283 IPR001932 -
Lja5g3153 431 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 7 427 - -
Lja5g3153 431 ProSiteProfiles PPM-type phosphatase domain profile. 45 297 IPR001932 -
Lja5g3153 431 SUPERFAMILY PP2C-like 36 297 IPR036457 -
Lja5g3153 431 PANTHER ALPHABET, ISOFORM E-RELATED 7 427 - -
Lja5g3153 431 SMART PP2C_4 25 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3153 Lja-Chr5 61432172 61443008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3153 11 431 PP2C-type Phosphatase Gene Family AT1G47380 78.910 0.0 706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3153 5 61432172 61443008 Lja5g3153 5 61432172 61443008 ECH
Lja5g3153 5 61432172 61443008 Lja1g4168 1 53084988 53089868 PCT