Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3132 ATGAATCCCCTCTCCCTCCTCCACACCGCAAATGCACCACCACCACCATGCCCTCTCCTCCACCACCACCGTCAAAAACCCACCACAGTCTCAGTCTCAGTCTTATTCCCGCACAGACACAACAGATTCCGATGCTGCTCCTCCATCGAGATCGACATGGTGAGAGACAACAAGACAGGCTCCTACGCCGCTAAACAGAACAAGGTCGTCGTCCTCTGGGACCTCGACAACAAACCCCCCCGCGGCCCACCGTACCACGCCGCCGTCTCCCTCAAAACCCTAGCCGAATCCTTCGGCGACGTCGTCGACATCTCCGCCTACGCCAACCGCCACGCCTTCATCCACCTCCCTCAGTGGGTCCTCCACGAGCGCCGCCAACGCAAAACCACCGACATCCTCGAGAAAAAGGGCATCGTCACGCCCTCTGATCCCTACGTCTGCACCGTCTGCGGCCGCAAGTGCAAGACCAATCTCGATCTGAAGAAGCACTTCAAGCAGTTACATCAGCGCGAGCGGCAGAAGAAGCTGAATCGCATGAACTCGCTCAAGGGGAAGAAGCGACAGCGGTTTAAGGAGAGGTTTATTCGTGGGAACCATAAGTATAACGAGGCGGCCAGGACGCTTGTGACGCCCAAGGTTGGGTATGGTTTAGCGTCGGAGCTGCGGCGTGCTGGGGTTTTTGTCAAGACGGTGGAGGATAAGCCTCAGGCGGCGGATTGGGCGTTGAAGAGGCAGATGCAGCATTCCATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCAGATGATTCGGATTTCTCCGAGATGTTGAAGCGGGCCAGGGAGGCCAATTTGGGGACCGTGGTGGTCGGGGATGCCGATAGGGCATTGGGGCAGCATGCTGATTTTTGGGTTCCCTGGATTGCGGTCGAGAAGGGCGAGGTTTCGGAGATGGATTTGAAGAACAGGGAGAGGAGGAGGAGAAGAACAACAACAGAGGATTCGCCGGATGGCTTGTTTTTCAATGAGGGTGATGAGGAATTGGATGATGATTTTGTGTTGGTGTATAGTGAGGATGATGATGATGATGATGATGATGATGATGATGATGATGACTACACAGATGATGAGGATGAAGAAGAAGGAGGGTTTTATTCTTTATAA 1143 0.5398 MNPLSLLHTANAPPPPCPLLHHHRQKPTTVSVSVLFPHRHNRFRCCSSIEIDMVRDNKTGSYAAKQNKVVVLWDLDNKPPRGPPYHAAVSLKTLAESFGDVVDISAYANRHAFIHLPQWVLHERRQRKTTDILEKKGIVTPSDPYVCTVCGRKCKTNLDLKKHFKQLHQRERQKKLNRMNSLKGKKRQRFKERFIRGNHKYNEAARTLVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLKRAREANLGTVVVGDADRALGQHADFWVPWIAVEKGEVSEMDLKNRERRRRRTTTEDSPDGLFFNEGDEELDDDFVLVYSEDDDDDDDDDDDDDDYTDDEDEEEGGFYSL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3132 380 Gene3D - 60 301 - -
Lja5g3132 380 PANTHER - 36 356 - -
Lja5g3132 380 CDD PIN_LabA-like 155 285 - -
Lja5g3132 380 PANTHER OS06G0166200 PROTEIN 36 356 - -
Lja5g3132 380 SMART c2h2final6 145 168 IPR013087 -
Lja5g3132 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 173 IPR013087 -
Lja5g3132 380 ProSitePatterns Zinc finger C2H2 type domain signature. 147 168 IPR013087 -
Lja5g3132 380 MobiDBLite consensus disorder prediction 332 380 - -
Lja5g3132 380 MobiDBLite consensus disorder prediction 316 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3132 Lja-Chr5 61099067 61100674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3132 4 374 C2H2 Transcription Factor Family AT5G52010 59.398 2.91e-152 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g3132 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3132 5 61099067 61100674 Lja5g3132 5 61099067 61100674 ECH