Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3130 ATGGAGATTCCGATGGCCGCAACTGTTGTGGATTTTGTCAACACTGCGTTAGGTTGGCTCAGATTTGCTGTTGATGCTCCGTCTGCGCGAGCTGTAGTTTTCGGAGTCAATATCGGTGGACATTTGTTTCTCGAAGTTTTTCTCCTGGTGGTCATACTATTCTTGCTCTCCCAGAAAAGTTACAAGCCTCCTAAAAGGCCCTTAACAAACAAGGAAATTGACGAGCTATGTGATGAATGGGCTCCAGAATCCCTTATTCCTTCTCTTAATGAAGAGATGTTGTATGAACCACCAGTGCTGGAGAGTGCTGCTGGGCCACATACCATAGTTAATGGGAAAGACGTTGTCAATTTTTCTTCAGCAAACTATCTTGGGCTTGTAGGTCATCAAAAGTTACTTGACTCATGTACTTCTGCTTTAGAGAAATACGGTGTTGGTTCTTGTGGTCCCCGTGGGTTTTATGGAACAATTGATGTCCATCTTGACTGTGAAGCGAGAATAGCTAAGTTTTTAGGAACCCCTGATTCAATTCTCTACTCCTATGGACTTTCGACCATGTTCAGTGCAATTCCTGCTTTCTCTAAGAAAGGAGATATAATTGTAGCGGATGAGGGAGTCCACTGGGGAATACAGAATGGCCTTCATCTTTCTAGAAGCACAGTGGTGTATTTTAAGCACAATGACATGGATTCTTTAAGAGAAACATTAGAGAAAATTACTATCAAATATAAGCGGGTCAAGAACTTGAGGCGTTATATTGTTGTTGAAGCCATCTACCAGAATTCTGGCCAAATAGCACCCTTGGATGAGATCATTAAATTGAAAGAAAAATATCGTTTTCGTGTATTGATGGACGAGAGCAACTCGTTTGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAATACTATGACGTTCCGGTTGAGAAGTTGGATATTATAACTGCTGCTATGGGACATGCATTGGCCACAGAAGGAGGATTCTGCACTGGAAATGCAAGAGTTATTGATCACCAACGATTGAGTAGCTCTGGCTATGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCAAGCGCTGCAATTACAGCTATTGATGTCCTTGAGGAAAATCCCAGTTTGATAACGAAGTTGAAGAACAACATTGCTGTGTTATGGAAAGGATTGTCAAAAATACCTGGCTTCACAATTTCAAGTCATCCAGAGTCACCAATTATTTATTTGAGACTATTGAAGTCAACAGGTTCCGTGAAGGATGACCAACATCTGCTTGAAAACATTGCTGAGCGTGTTTTAAAAGAAGATTCTGTGTTTGTGGTGACTTCCAAAAGATCAACATTGGACAAATGCCGTTTGCCTGTAGGAATTAGATTGTTTGTTTCTGCAGGGCATTCAGAGTCTGATCTTCACAAGGCATCTGAATCATTGAAAAGGGTCGCTGCATTAGTCCTGGGTGGTCGTAATTGA 1464 0.418 MEIPMAATVVDFVNTALGWLRFAVDAPSARAVVFGVNIGGHLFLEVFLLVVILFLLSQKSYKPPKRPLTNKEIDELCDEWAPESLIPSLNEEMLYEPPVLESAAGPHTIVNGKDVVNFSSANYLGLVGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRSTVVYFKHNDMDSLRETLEKITIKYKRVKNLRRYIVVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDESNSFGVLGSSGRGLTEYYDVPVEKLDIITAAMGHALATEGGFCTGNARVIDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPSLITKLKNNIAVLWKGLSKIPGFTISSHPESPIIYLRLLKSTGSVKDDQHLLENIAERVLKEDSVFVVTSKRSTLDKCRLPVGIRLFVSAGHSESDLHKASESLKRVAALVLGGRN* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3130 487 Gene3D - 129 370 IPR015421 GO:0003824
Lja5g3130 487 PANTHER LONG CHAIN BASE BIOSYNTHESIS PROTEIN 1-LIKE 10 484 - -
Lja5g3130 487 SUPERFAMILY PLP-dependent transferases 88 479 IPR015424 -
Lja5g3130 487 Coils Coil 229 249 - -
Lja5g3130 487 Pfam Aminotransferase class I and II 113 475 IPR004839 GO:0009058|GO:0030170
Lja5g3130 487 PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE 10 484 - -
Lja5g3130 487 Gene3D Aspartate Aminotransferase, domain 1 108 473 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3130 Lja-Chr5 61072342 61086027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3130 5 339 Acyl Lipid Metabolism Gene Families AT4G36480 78.507 0.0 572