Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3126 ATGGTGATGGAAGCAGGGGAAGATTGTTGCGTGAAGGTTGCAGTCCACGTTCGACCGCTCATAAGCGAAGAGAAGCTTCAAGGTTGCAAAGACTGCGTAACCGTTGTTCCAGGGAAGCCTCAGGTACAAATTGGTACTCATTCCTTTACATTTGATCATGTTTATGGGAGTACTGGTTCTCCCCCGTCTGCCATGTTTGATGAATGTGTTGCTTCTCTTGTTGATGGCTTGTTCCAAGGATATAATGCTACTGTTCTTGCATATGGTCAGACTGGTTCTGGAAAAACATACACCATGGGCACTGGATTTAAAGATGGTTGCCAGACAGGAATAATACCTCAAGTTATGAGTGTCTTGTTTAGCCAAATTGAGACCTTAAAGCATCAGATTGAGTTTCAGCTGCATGTTTCCTTTATTGAGATTCTTAAAGAAGAAGTAAGAGACTTGCTGGATCCATCCTCAATGAACAAACAAGATACTGCAAATGGAAATGGACATGCAGGAAAAGTGACTATTCCTGGGAAACCGCCAATACAAATTCGTGAGACGTCAAATGGTGTAATCACCTTAGCAGGATCTACTGAAGTCAGCGTTACATCACTAAAAGAAATGGCTGCTTGCCTAGTACAAGGATCATTGAATAGAGCAACTGGGAGCACAAATATGAACAACCAATCCAGTCGCTCACATGCCATCTTCACCATCACATTAGAGCAAATGCGGAAGCTCAGTAGTCCTACCGAGATCAGTTCAAATGATACCATGAATGAAGAGTATCTTTGTGCCAAGTTGCACTTAGTAGATCTTGCTGGATCAGAACGAGCTAAAAGAACAGGTTCTGATGGTCTGCGTTTTAAGGAAGGAGTTCACATTAACAAAGGCCTTCTAGCACTCGGTAATGTAATCAGTGCGCTTGGTGATGAAAAGAAGAGAAAGGAAGGCGCTCATGTTCCTTATAGGGATAGTAAACTCACTAGGCTTTTACAGGATTCTCTTGGTGGTAACAGCCGTACTGTTATGATAGCCTGCATAAGTCCTGCTGATATTAATGCCGAAGAAACCCTTAACACTTTGAAGTATGCAAATCGTGCACGCAATATCCAAAATAAGCCTGTTGTCAATAGAGATCCCATGTCCAATGAGATGCTAAAAATGCGACAACAACTAGAGTGTTTGCAAGCAGAACTTTGTGCTCGTTCTGGTGGCTCTTCTGGGGAAGTTCAGGTCCTCAAGGAAAGGATTGCTCGGCTCGAAGCAGCCAATGAGGGTCTTTGCCGTGAACTTCATGAATACCGTAGCAGATGCTCTGTGGTAGTACCAAGCGAAAAGGATGATTATGATGATAGCACATGCAACGTAAAGACTGATGGGCTTAAAAGGGGCTTGCCTATCACAACCTCTGATTATCCAATGAGTGAAACAACAGGGGGTTCAAGGGAAATTGAAGAAGTAGCAAAAGAGTGGGAGCATGCACTTCTGCAAAATAGCATGGATAGAGAGTTACATGAACTGAATAAACGATTGGAGGAGAAGGAGTCTGAGATGAAGCTTTTTGGAGTGCCTGATGCTGAAGCACTCAAGCAGCACTTTGGAAGGAAGATAGTAGAACTTGAGGATGAGAAGAGAGCTGTCCAGCAAGAGAGGGACCATCTTTTGGCTGAAGTTAATGGACAAACACAGAAATCAGAGGATATCCATGCCCAAAAATTAAAAGCACTTGAAGCCCAGATTCTGGATCTGAAGAAGAAACAGGAGAGCCAGGTCCAGCTTCTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCCAAGCGTCTGCAAGATGAAATACAATCTATAAAAGCTCAAAAGGTTCAATTACAACAAAGGATAAAACAAGAGGCAGAACAGTTTCGGCAGTGGAAGGCTTCTAGAGAGAAAGAGCTGCTGCAATTAAGGAAAGAAGGAAGAAGAAACGAGTTCGAGAGGCATAAGCTGCAAGCTCTGAATCAGCGCCAGAAAATGGTCCTTCAGAGAAAGACAGAAGAAGCTGCAATGGCCACCAAGAGGTTAAAGGAGTTGTTAGAAGCTCGTAAATCTTCCAGAGACACTTCAGTTACAATGAACGGAAATGGAACAAATGGACAGAGAAATGATAAGTCCTTACAACGGTGGCTTGATCACGAGCTAGAAGTCATGGTAAAGGAGCATGAAGTTCGTTTTGAGTATGAGAAGCAGAGCCAAGTACGGGCTGCTCTTGCAGAAGAGTTAGCCATGCTGAAACAAGTAAATGAGTTTGCTGCCAAGGGTTTCAGTCCACCAAGAGGAAAGAATGGATTTGCAAGAGCATCCTCTATGTCGGTAAATGCAAGAATGGCTAGAATAGCTTCACTTGAGAACATGATGAGCATATCATCTAATTCACTAGTGGCAATGGCTTCTCAACTTTCTGAGGCAGAAGAAAGAGAACGGGCCTTCACTAATCGTGGCCACTGGAACCAGTTGCGCTCAATGGGGGAAGCCAAGAATTTGCTTCAATATATGTTTAATTCTCTTGCAGACAACAGGTGCCAAGCGTGGGAGAAGGACATGGAGATCAGAGAGATGAAAGATCAAATCAAAGAACTCGTAGGTCTGTTACGGCAAAGTGAGATTAAGAGAAAGGAAGTTGAGAAGGAACTAAAAGTGAGAGAGCAAGCTGTTGCAACCACATTGGCTACACCAATTTCTGGAAACTCTCCAAATTTATTGAAACAACATGTTGAAGACATTCAGGAACATTTATCTCCAGATTCTGTGCCAGTGCAGAAACAGCGCAAATATACACCAGGCATTGCTAATGGCCAACTGAGGGAATCTGCTGCATATATAGATCAGAGTAGAATGATGGTACCCATTGGGCAACTCTCAATGAAAAAACTAGCAGTTGCAGGACAAGCTTCTGGCAAGCTATGGAGGTGGAAAAGAAGCCATCATCAATGGCTGTTACAATTCAAATGGAAGTGGCAGAAGCCCTGGAGACTTTCTGAACGGATCCGACACAGTGATGAGACGATCATGAGAGCAAGGCCACGTTCACAGGCTTTGCCGCATGTCGTGTGA 3075 0.4354 MVMEAGEDCCVKVAVHVRPLISEEKLQGCKDCVTVVPGKPQVQIGTHSFTFDHVYGSTGSPPSAMFDECVASLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQTGIIPQVMSVLFSQIETLKHQIEFQLHVSFIEILKEEVRDLLDPSSMNKQDTANGNGHAGKVTIPGKPPIQIRETSNGVITLAGSTEVSVTSLKEMAACLVQGSLNRATGSTNMNNQSSRSHAIFTITLEQMRKLSSPTEISSNDTMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGAHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLECLQAELCARSGGSSGEVQVLKERIARLEAANEGLCRELHEYRSRCSVVVPSEKDDYDDSTCNVKTDGLKRGLPITTSDYPMSETTGGSREIEEVAKEWEHALLQNSMDRELHELNKRLEEKESEMKLFGVPDAEALKQHFGRKIVELEDEKRAVQQERDHLLAEVNGQTQKSEDIHAQKLKALEAQILDLKKKQESQVQLLKQKQKSDEAAKRLQDEIQSIKAQKVQLQQRIKQEAEQFRQWKASREKELLQLRKEGRRNEFERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSRDTSVTMNGNGTNGQRNDKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALAEELAMLKQVNEFAAKGFSPPRGKNGFARASSMSVNARMARIASLENMMSISSNSLVAMASQLSEAEERERAFTNRGHWNQLRSMGEAKNLLQYMFNSLADNRCQAWEKDMEIREMKDQIKELVGLLRQSEIKRKEVEKELKVREQAVATTLATPISGNSPNLLKQHVEDIQEHLSPDSVPVQKQRKYTPGIANGQLRESAAYIDQSRMMVPIGQLSMKKLAVAGQASGKLWRWKRSHHQWLLQFKWKWQKPWRLSERIRHSDETIMRARPRSQALPHVV* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3126 1024 Coils Coil 527 554 - -
Lja5g3126 1024 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 3 1023 - -
Lja5g3126 1024 SMART kinesin_4 8 375 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g3126 1024 Pfam Kinesin motor domain 18 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g3126 1024 ProSiteProfiles Kinesin motor domain profile. 10 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g3126 1024 Coils Coil 857 891 - -
Lja5g3126 1024 PRINTS Kinesin heavy chain signature 80 101 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g3126 1024 PRINTS Kinesin heavy chain signature 263 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g3126 1024 PRINTS Kinesin heavy chain signature 220 237 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g3126 1024 PRINTS Kinesin heavy chain signature 317 338 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g3126 1024 Coils Coil 668 688 - -
Lja5g3126 1024 MobiDBLite consensus disorder prediction 687 710 - -
Lja5g3126 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 398 IPR027417 -
Lja5g3126 1024 MobiDBLite consensus disorder prediction 153 178 - -
Lja5g3126 1024 Gene3D Kinesin motor domain 2 395 IPR036961 -
Lja5g3126 1024 Coils Coil 494 514 - -
Lja5g3126 1024 MobiDBLite consensus disorder prediction 692 710 - -
Lja5g3126 1024 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 3 1023 - -
Lja5g3126 1024 ProSitePatterns Kinesin motor domain signature. 262 273 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja5g3126 1024 Coils Coil 563 635 - -
Lja5g3126 1024 Coils Coil 407 434 - -
Lja5g3126 1024 CDD KISc_KIF4 9 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3126 Lja-Chr5 61000261 61011762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3126 11 425 Miscellaneous Gene Families AT5G06670 36.092 8.07e-56 205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3126 5 61000261 61011762 Lja5g3126 5 61000261 61011762 ECH
Lja5g3126 5 61000261 61011762 Lja1g4140 1 52591374 52600834 PCT