Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3123 ATGTGTAGTATCACTGTAAAATTGGTCTCAACTTTGCACATCCTCTTGCTGTTTCTTCCTTTCCTCATGTCAGCACATGACACAAACAGAAACAAAGGTTGCAACAACAACAATAGCCAAGTAGACAAAACAACATCAGTGACAACCCCATGTCCAAAATCAACAACAGTTCAAGCAACAAAAGCTAAAACAAATGCTTTGGTATTTGCAGATCAAAGACTTGCAGTAGTGTACCCAGTGATCCAAAAATTCAAGTCCACTATCACTTCAGATCCCTTAGGAGTAACCAAATCATGGGTAGGCTCAGATATATGCAGCTACAGAGGATTTTTCTGTGATAACCCACCAGGAAACAACTCTGCTATTGCTCTGGCTTCAGTTGACTTCAATGGTTTCCAGCTCAGTGCTCCTTCCCTTGATGGGTTTCTCGATAAACTCCCTGATATTGCTCTCTTCCATGCAAATTCCAACAAATTTTCAGGCACAATTTCCCCTCAAATCACCAAGCTCCCTTATCTGTATGAGCTTGATGTTAGCAACAACAAACTTTCTGGTCCATTTCCCAATTCTGTTCTAGGCATGAAAACTTTGACATTCTTGGATATCAGGTTTAATTTTTTCTCTGGGGCAGTCCCACCACAGATTTTCACACAGGACCTTGAAGTTCTCTTCATCAATGACAACCTTTTCACTCAGAATTTACCTGATAATCTTGACAACACTCATATTCTCTTGCTCACTTTGGCAAACAACAAGTTCAAGGGTCCAATTCCTAGAAGCCTTCCAAAAGCACTTTCAACTCTCACTGAAGTGCTTTTTCTGAATAACCAGCTCACAGGTTGTTTGCCTTATGAGATTGGGTTCCTTCAAGAGGCCACAGTGTTTGATGCTGGAAATAACCAGTTAACAGGTCCTTTACCATTTTCTTTGAGTTGTCTTGAGAAAGTGGAGCTTCTCAATTTGGCTGGTAATCTTTTGTTTGGGATGGTGCCAGAAGTGGTGTGTGGAGAGTTGGGGAATTTGGTTAACTTTTCACTGTCAGATAACTATTTTACCAATGTGGGGCCTCTGTGTAGGATCTTGATTCAGAGAGGAGTTCTTGATGTTAGAAACAATTGTGTTCCTGATCTTCCATTTCAGAGATCAGTGGTTGAGTGTGCAGATTTCTTTGCACACCCTAGGATGTGTCCCTTCATGTGGTCTCATAGTTTCATCCCTTGTCAGCTTCCTTTTCATCAAAACTCCCCAGCTACTTCAATTCCTTAG 1266 0.4115 MCSITVKLVSTLHILLLFLPFLMSAHDTNRNKGCNNNNSQVDKTTSVTTPCPKSTTVQATKAKTNALVFADQRLAVVYPVIQKFKSTITSDPLGVTKSWVGSDICSYRGFFCDNPPGNNSAIALASVDFNGFQLSAPSLDGFLDKLPDIALFHANSNKFSGTISPQITKLPYLYELDVSNNKLSGPFPNSVLGMKTLTFLDIRFNFFSGAVPPQIFTQDLEVLFINDNLFTQNLPDNLDNTHILLLTLANNKFKGPIPRSLPKALSTLTEVLFLNNQLTGCLPYEIGFLQEATVFDAGNNQLTGPLPFSLSCLEKVELLNLAGNLLFGMVPEVVCGELGNLVNFSLSDNYFTNVGPLCRILIQRGVLDVRNNCVPDLPFQRSVVECADFFAHPRMCPFMWSHSFIPCQLPFHQNSPATSIP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3123 421 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 43 416 - -
Lja5g3123 421 PANTHER BNAA09G53810D PROTEIN 43 416 - -
Lja5g3123 421 Pfam Leucine rich repeat N-terminal domain 82 113 IPR013210 -
Lja5g3123 421 Gene3D Ribonuclease Inhibitor 79 238 IPR032675 -
Lja5g3123 421 Gene3D Ribonuclease Inhibitor 239 360 IPR032675 -
Lja5g3123 421 SUPERFAMILY L domain-like 83 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3123 Lja-Chr5 60985050 60986926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3123 66 393 Leucine-rich Repeat extension Gene Families AT3G24480 42.683 9.04e-84 263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3123 5 60985050 60986926 Lja5g3123 5 60985050 60986926 ECH