Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3121 ATGGGTTCAGCTACCATGGCGATCGTCCTCATGTTCACTCTCCTGGCGGTTTCCTCCGCCATGGACATGTCGATCATCTCATACGACAACTCCCACATGGGAAACTCCAGAACTGACGACGAGGTGAAGAACATGTACGAGGAGTGGTTGGTGAAACACGGCAAGGTGTACAACGCGCTAGGAGAGAAGGAGAAGAGGTTTGAGATCTTCAAAGACAACCTCAAGTTCATCGATGAGCATAACAACGCTGATCTGAACCGGAGTTACAAGCTGGGTCTGAACCGCTTCGCTGATCTGACCAACGAGGAGTACCGGTCTAAGTACTTTGGGACCCGGGTTGACCCGAACCGGAGGATGGCGAAGTTGAGGACCAAGAGTGACCGGTACGCGCCACGTGTCGGTGACAAGCTGCCGGAGTCTGTTGATTGGAGGAAGGAAGGTGCTCTTGTTGGAGTCAAAGACCAAGGAAGCTGCGGGAGCTGTTGGGCCTTCTCAGCTGTCACCGCCGTGGAATCAATTAATAAGATAGTAACCGGCGATCTAGTTTCACTATCAGTACAAGAGCTAGTAGACTGTGATAGATCATATAATGAAGGATGCAATGGTGGTCTTATGGACTACGCCTTTGACTTCATCATCAACAATGGTGGCATTGACTCCGAAGAAGATTACCCCTACAAAGGTGTTGATGGTAGATGTGACCAGTACAGGAAAAATGCTAAAGTCGTTTCAATTGATGACTATGAAGATGTTCCTACCTATGATGAGATAGCCTTGAAGAAAGCTGTTGCCAATCAGCCTATTAGTGTTGCTATTGAAGGAGGTGGCAGGGAATTCCAGTTATATGATTCTGGTATATTCACTGGGCGATGTGGGACAGCATTAGACCATGGTGTTGTTGCTGTTGGGTATGGCACAGAAAACGGTCTTGATTATTGGATTGTGAGGAATTCATGGGGTGCTAGCTGGGGAGAGGGAGGTTATATCAGGCTTGAACGTAATCTGGGAAATGCTAGATCAGGCAAGTGTGGAATTGCAATTGAGCCATCCTATCCCATCAAGAATGGTCAGAACCCGCCTAACCCGGGGCCATCACCCCCTTCACCGGTGACTCCACCGTCAGTGTGTGACAATTACTACAGTTGTGCTGAAGCCACCACTTGCTGCTGCATTTATGAATATGGAAACTCTTGCTTTGAGTGGGGATGTTGTCCTCTCGAGGGTGCTACCTGCTGTGATGACCACTACAGTTGCTGCCCCAGTGACTACCCTGTCTGTGACACTTATAGAGGGCTCTGTCTCAAGGGCTCAAACAACCCATTTGGAGTGAAGGCATTGAAGCGAACTCCAGCTAAGCCCAACTTGGCCTTTGGAGTGAAGAAGAAGAAGATCAGCGATGCTTAA 1404 0.4886 MGSATMAIVLMFTLLAVSSAMDMSIISYDNSHMGNSRTDDEVKNMYEEWLVKHGKVYNALGEKEKRFEIFKDNLKFIDEHNNADLNRSYKLGLNRFADLTNEEYRSKYFGTRVDPNRRMAKLRTKSDRYAPRVGDKLPESVDWRKEGALVGVKDQGSCGSCWAFSAVTAVESINKIVTGDLVSLSVQELVDCDRSYNEGCNGGLMDYAFDFIINNGGIDSEEDYPYKGVDGRCDQYRKNAKVVSIDDYEDVPTYDEIALKKAVANQPISVAIEGGGREFQLYDSGIFTGRCGTALDHGVVAVGYGTENGLDYWIVRNSWGASWGEGGYIRLERNLGNARSGKCGIAIEPSYPIKNGQNPPNPGPSPPSPVTPPSVCDNYYSCAEATTCCCIYEYGNSCFEWGCCPLEGATCCDDHYSCCPSDYPVCDTYRGLCLKGSNNPFGVKALKRTPAKPNLAFGVKKKKISDA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3121 467 SMART Inhibitor_I29_2 46 104 IPR013201 -
Lja5g3121 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 312 331 IPR025661 -
Lja5g3121 467 Gene3D Granulin 373 436 IPR037277 -
Lja5g3121 467 CDD Peptidase_C1A 138 352 IPR039417 -
Lja5g3121 467 SMART pept_c1 137 353 IPR000668 GO:0006508|GO:0008234
Lja5g3121 467 SUPERFAMILY Granulin repeat 373 407 - -
Lja5g3121 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 295 305 IPR025660 -
Lja5g3121 467 SUPERFAMILY Cysteine proteinases 38 353 IPR038765 -
Lja5g3121 467 Pfam Granulin 387 434 IPR000118 -
Lja5g3121 467 PRINTS Papain cysteine protease (C1) family signature 297 307 IPR000668 GO:0006508|GO:0008234
Lja5g3121 467 PRINTS Papain cysteine protease (C1) family signature 312 318 IPR000668 GO:0006508|GO:0008234
Lja5g3121 467 PRINTS Papain cysteine protease (C1) family signature 155 170 IPR000668 GO:0006508|GO:0008234
Lja5g3121 467 SMART GRAN_2 376 433 IPR000118 -
Lja5g3121 467 PANTHER CYSTEINE PROTEASE 29 383 - -
Lja5g3121 467 Pfam Cathepsin propeptide inhibitor domain (I29) 46 104 IPR013201 -
Lja5g3121 467 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 383 - -
Lja5g3121 467 Pfam Papain family cysteine protease 137 353 IPR000668 GO:0006508|GO:0008234
Lja5g3121 467 Gene3D Cysteine proteinases 23 355 - -
Lja5g3121 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 155 166 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3121 Lja-Chr5 60948765 60953130 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3121 5 60948765 60953130 Lja4g3378 4 63871723 63874864 ECH
Lja5g3121 5 60948765 60953130 Lja5g0380 5 3366377 3368889 ECH
Lja5g3121 5 60948765 60953130 Lja5g3121 5 60948765 60953130 ECH
Lja5g3121 5 60948765 60953130 Lja1g4138 1 52566953 52569290 PCT