Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3118 ATGGGCCAGGCTTCTTCCACGGCCGCCGTCGCTTGCCGCCGCGAAAATTGTCAAGCAAACCGCTCCGGCAGCATCTCCAAGACCAGATCCACTGCCTCGGTATCTCCGATGCTCGCCGCCGAGGAAGACGCCGATGTTAACCGCGGTGGCCGGGCGGTGGTTGAAGGAAAAACAGATTACATCTCCGATCTCCCTGATGAGTGTTTGGCTGTGGTGTTTCAGTCGCTGAGCTCGGCTGATCGGAACCGGTGCTCGCTCGTCTGCCGGCGGTGGCTTATGGTTGAGGGACAGAGCCGGCATCGTCTCTCGCTCAACGCGCAGATGGATCTGCTTCCGGTAATCACTTCTCTGTTCTCTCGATTTGATTCTGTGACGAAGCTTGCTCTGAAATGCGATCGCAGATCGGTTAGCATCCGCGACGACGCGCTTGCTATGATCTCTGAGAGGTGCCCTAATCTCACGCGCCTCAAGCTCCGCGCGTGCCGCGAGATCACTGACTCCGGGATGGAGGCCTTCGCGAAGAATTGTAAGGGTTTGAAGAAGCTCTCGTGCGGATCGTGCACGTTTGGATCTAAAGGGATGAACGCTGTGCTTGATAATTGTGCTTCCCTGGAGGAGCTATCGGTGAAGCGCCTCCGTGGAATCACCGAGACGGCGGAGCCGATTGGTGCTGGCGTTGCGGCGGGGTCGCTGAAGACGCTTTGCTTGAAGGAGCTTTACAACGGGCAATGCTTCAGGTCGTTGATTCTCGGTGCCAAGAACTTGAGGACGCTGAAGCTTTTCCGGTGCTCTGGTGACTGGGATAGCCTCTTTCAGCTCGTTGCTGCGGAAAGGGCCACGAGCATGGTCGAGATTCACCTGGAGAGGCTCCAAATTGGCGATGCTGGGTTGCGAGCTATCGTGAACTATTCGAGCTTGGAGATTTTGCATCTTGTGAAGACCCCTGAGTGCACGGATTCAGGGCTTGTTGCGGTTGCGGAGCGATGCAAGCTGTTGAGGAAGCTTCATATTGATGGGTGGAAGGCGAATCGAATTGGTGATGAAGGGTTGATAGCGGTTTCCAAGTTCTGCCCTAATTTGCAGGAACTTGTGCTCATTGGGGTGAACCCCACTAAGGCTAGTTTGGAAATGTTGGCATCTAATTGCCAGAATCTAGAGCGGTTGGCTCTGTGTGGAAGCGATACAGTTGGTGATCCTGAATTATCTTGCATTGCCGCGAAGTGTGTGGCTTTGAAGAAACTCTGCATTAAGAGTTGTCCTGTTTCTGATCAAGGAATGCAAGCACTGGCAAGTGGGTGTCCCAATTTGGTGAAGGTGAAGGTGAAGAAGTGCAAGGGTGTCACCTCTGAAGGTGGGGATTGGTTGAGGCTCACAAGGGGTTCAGTTTCTGTTAATTTAGATGCAAATGAAGCAGAACTTCAAGATGCGAGTGCTAGTGATGGTGGAGCACAAGAAAATGGCCTAGAATTTCCTCCAATGCCTGGCCAAACAGCAGCATCTTCATCGGCCAATGTTGGTGCATCGATCAGTGGTGCTGGACGATCTAGTTCGTTCAAGTCGAGGTTGGGACTTTTGTCTGGGAGGAGCTTAGTGGCTAGCACCTTGAGAAGATGGTCAGGTGGTAGCACTAGTGGGCGCCATGCTTAG 1647 0.5349 MGQASSTAAVACRRENCQANRSGSISKTRSTASVSPMLAAEEDADVNRGGRAVVEGKTDYISDLPDECLAVVFQSLSSADRNRCSLVCRRWLMVEGQSRHRLSLNAQMDLLPVITSLFSRFDSVTKLALKCDRRSVSIRDDALAMISERCPNLTRLKLRACREITDSGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCASLEELSVKRLRGITETAEPIGAGVAAGSLKTLCLKELYNGQCFRSLILGAKNLRTLKLFRCSGDWDSLFQLVAAERATSMVEIHLERLQIGDAGLRAIVNYSSLEILHLVKTPECTDSGLVAVAERCKLLRKLHIDGWKANRIGDEGLIAVSKFCPNLQELVLIGVNPTKASLEMLASNCQNLERLALCGSDTVGDPELSCIAAKCVALKKLCIKSCPVSDQGMQALASGCPNLVKVKVKKCKGVTSEGGDWLRLTRGSVSVNLDANEAELQDASASDGGAQENGLEFPPMPGQTAASSSANVGASISGAGRSSSFKSRLGLLSGRSLVASTLRRWSGGSTSGRHA* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3118 548 SMART LRR_CC_2 357 381 IPR006553 -
Lja5g3118 548 SMART LRR_CC_2 382 407 IPR006553 -
Lja5g3118 548 SMART LRR_CC_2 433 460 IPR006553 -
Lja5g3118 548 SMART LRR_CC_2 329 356 IPR006553 -
Lja5g3118 548 SMART LRR_CC_2 150 175 IPR006553 -
Lja5g3118 548 SMART LRR_CC_2 408 432 IPR006553 -
Lja5g3118 548 SMART LRR_CC_2 303 328 IPR006553 -
Lja5g3118 548 SMART LRR_CC_2 176 200 IPR006553 -
Lja5g3118 548 MobiDBLite consensus disorder prediction 473 519 - -
Lja5g3118 548 SUPERFAMILY F-box domain 55 93 IPR036047 GO:0005515
Lja5g3118 548 SUPERFAMILY RNI-like 111 456 - -
Lja5g3118 548 ProSiteProfiles F-box domain profile. 58 104 IPR001810 GO:0005515
Lja5g3118 548 MobiDBLite consensus disorder prediction 495 519 - -
Lja5g3118 548 Pfam Leucine Rich repeat 150 173 IPR001611 GO:0005515
Lja5g3118 548 Gene3D Ribonuclease Inhibitor 96 475 IPR032675 -
Lja5g3118 548 PANTHER F-BOX PROTEIN SKIP2 46 470 - -
Lja5g3118 548 Gene3D - 60 95 - -
Lja5g3118 548 PANTHER UNCHARACTERIZED 46 470 - -
Lja5g3118 548 Pfam F-box domain 61 93 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3118 Lja-Chr5 60933490 60935582 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3118 5 60933490 60935582 Lja5g3118 5 60933490 60935582 ECH