Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3115 ATGGGAAGGTGGGCAATCGCTGTGCATGGTGGTGCTGGTGTTGACCCAAATCTCCCTCTCCAGCGTCAGGAAGAAGCAAAGCAACTCCTCACTCGCTGTCTCAATCTTGGCATCTCTGCTCTCACTTCCAACCTCTCCGCCATCGATGTCGTCGAACTTGTGGTGAGGGAATTGGAAACAGATCCAATCTTCAACTCTGGTCGTGGATCTGCCCTGACAGAGAAAGGGACTGTGGAAATGGAGGCTAGCATCATGGATGGCCCCAAGAGAAGATGCGGTGCCGTTTCAGGTGTCACCACCGTCAAGAACCCCATCTCTCTGGCTCGCTTGGTCATGGACAAATCCCCACATTCCTATCTCGCATTCGACGGTGCTGAGGATTTCGCCAGGAAACAGGGTGTGGAGCTTGTGGACAACGAGTACTTTATCACCCCTGACAATGTTGGCATGCTCAAGCTGGCAAAGGAAGCAAAAGCAATCTTGTTTGACTACAGAGTTCCAACAACTGCGTACGAGACATGCGGTGCAGGCGTTGAGAGCCCACTGTACATGAACGGAATGCCAATCAGTGTGTACGCCCCGGAGACAGTGGGGTGCGTGGTAGTGGACCGCGAAGGGAGGTGCGCGGCCGCCACATCAACCGGTGGGCTCATGAACAAGATGACCGGTCGAATCGGTGACTCACCCCTCATTGGTGCGGGGACCTACGCATGTGACGTTTGTGGTGTCTCATGCACCGGAGAAGGCGAGGCCATCATACGTGGCACGCTGGCGCGTGAGGTGGCAGCTGTCATGGAGTACAAGGGCTTGGGCCTCCAGCAGGCTGTGGACTTTGTCATCAAGCATCGTTTGGATGAAGGCTTGGCGGGCCTCATCGCCGTGTCCCACACCGGTGAAGTGGCTTATGGTTTTAACTGCAACGGCATGTTCAGGGGCTGTGCCACTGAGGATGGGTTCATGGAGGTTGGAATATGGGAATGA 981 0.5525 MGRWAIAVHGGAGVDPNLPLQRQEEAKQLLTRCLNLGISALTSNLSAIDVVELVVRELETDPIFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGVTTVKNPISLARLVMDKSPHSYLAFDGAEDFARKQGVELVDNEYFITPDNVGMLKLAKEAKAILFDYRVPTTAYETCGAGVESPLYMNGMPISVYAPETVGCVVVDREGRCAAATSTGGLMNKMTGRIGDSPLIGAGTYACDVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLQQAVDFVIKHRLDEGLAGLIAVSHTGEVAYGFNCNGMFRGCATEDGFMEVGIWE* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3115 326 PANTHER L-ASPARAGINASE 1 326 IPR000246 GO:0016787
Lja5g3115 326 CDD Asparaginase_2 5 318 - -
Lja5g3115 326 Pfam Asparaginase 4 325 IPR000246 GO:0016787
Lja5g3115 326 PANTHER PEPTIDASE T2, ASPARAGINASE 2, NUCLEOPHILE AMINOHYDROLASE-RELATED 1 326 - -
Lja5g3115 326 Gene3D (Glycosyl)asparaginase 196 326 - -
Lja5g3115 326 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 323 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3115 Lja-Chr5 60876535 60879198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3115 3 286 Miscellaneous Gene Families AT4G00590 28.664 2.94e-19 85.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3115 5 60876535 60879198 Lja5g3115 5 60876535 60879198 ECH
Lja5g3115 5 60876535 60879198 Lja1g4132 1 52473033 52474620 PCT