Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3113 ATGGATCGGGTCAAGGGTCCATGGAGCCCCGAAGAAGACGAAGCGTTAACGAGGCTGGTTCAGGTTCACGGCCCCAAGAACTGGACGGCGATAAGCAAATCGATTCCGGGTCGATCCGGGAAATCGTGCCGTCTGCGGTGGTGCAACCAGCTCTCGCCAGAGGTCGAGCACCGTCCGTTCACGCCGGAGGAGGACAGCGCCATCATCAGGGCGCATGCCAGGTTTGGGAACAAGTGGGCCACCATAGCTCGCATCCTCAACGGCCGCACCGATAACGCTGTGAAGAATCACTGGAACTCCACGCTTAAGAGAAAATGCTCCGCCGTCGATACCGCCGTTGATCACCGTCCTCTTAAACGGTCCGCCAGCGTCGGCGCGGGGTGTTTGAACCCGAGTAGCCCGACCGGGTCTGCCATGAGCGATCCGGGTCCTCCCGCCGCTATCTCCACTGACGCTCCGATAGCAGTACCCGCCGCTGTGGTTGTTCCTGCCACCGATCCAGCCACTTCGCTCAGCTTGTCTCTGCCCGGGTTTGATTCATCCGGGTCCGGGTCAGGGTCGAAGCAGCTGTTTGGGGCGGAGTTTCTGGCGGTGATGCAGGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCGGGGATGGAGGAGAAGAATGGAGCGTGTATGCCAGCGGAAGCCATTGGAAACGCTGTGATGAAACGAATGGGAATTAGCAACGTCAAGTAG 726 0.5895 MDRVKGPWSPEEDEALTRLVQVHGPKNWTAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDSAIIRAHARFGNKWATIARILNGRTDNAVKNHWNSTLKRKCSAVDTAVDHRPLKRSASVGAGCLNPSSPTGSAMSDPGPPAAISTDAPIAVPAAVVVPATDPATSLSLSLPGFDSSGSGSGSKQLFGAEFLAVMQEMIRKEVRSYMSGMEEKNGACMPAEAIGNAVMKRMGISNVK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3113 241 PANTHER TRANSCRIPTION FACTOR MYB73 2 201 - -
Lja5g3113 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Lja5g3113 241 CDD SANT 7 49 IPR001005 -
Lja5g3113 241 PANTHER MYB PROTEIN-RELATED 2 201 - -
Lja5g3113 241 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Lja5g3113 241 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Lja5g3113 241 Gene3D - 58 122 - -
Lja5g3113 241 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lja5g3113 241 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Lja5g3113 241 CDD SANT 59 102 IPR001005 -
Lja5g3113 241 SMART sant 56 104 IPR001005 -
Lja5g3113 241 SMART sant 4 53 IPR001005 -
Lja5g3113 241 Gene3D - 4 56 - -
Lja5g3113 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Lja5g3113 241 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3113 Lja-Chr5 60836478 60837663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3113 2 241 MYB Transcription Factor Family AT5G67300 49.671 5.99e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g3113 Myb_DNA-binding 4.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3113 5 60836478 60837663 Lja2g0300 2 2758008 2759889 ECH
Lja5g3113 5 60836478 60837663 Lja4g3387 4 64101993 64103624 ECH
Lja5g3113 5 60836478 60837663 Lja5g3113 5 60836478 60837663 ECH
Lja5g3113 5 60836478 60837663 Lja1g4130 1 52410876 52411578 PCT