Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3107 ATGGCCGACAAAGAGAACATCGCCGCCGTGCTCCGCCCCCAGCGCGAGGCCAAGAAGCGGGCCGCAGCTGCGTTATGCGAACTTCGCCCCAAGAAGAAGCGTGTTGTGTTGGGGGAGCTTACCAATCTCTCTAGCCCGGCGGAAAAGCCCACATCGGAGAAGAGGAGGAGGGTCGGAAAATCGAAGGCGCCGCCGCCGCCGGAGAAGCGGGATGACCCTCAAATGTGTTTGCCTTACGTTTCTGACATCTACGAGTATCTTCGGAGCATGGAGGTGGATCCTAGTAAAAGACCATTACCAGATTATGTGCAGAAAGTTCAAAGGGATGTTAATGCTAACATGAGGGGTGTTTTGGTGGATTGGTTGGTGGAGGTTTCTGAGGAGTATAAGCTTGTTTCGGACACGCTTTATTTCTGTGTTTCTTACATTGATAGGTTCCTCTCTTTGAATTCTTTGTCTAGACAGAAGCTGCAGTTACTTGGGGTTGCTTCCATGCTTGTTGCTTCAAAATATGAGGAGATCAAGCCACCTGAGGTGGAGGATTTTTGCTACATTACAGACAACACATACTCCAAGGAAGAGGTTGTGACAATGGAGGCTGATGTATTGAAGTCATTGAAGTTCGAATTGGGTGGTCCTACAGTAAAGACATTTCTAAGAAGATTCTCCAGAGTTGCTCAGGAGAGTATTGATACTTCAGACTTGCAATTTGAGTTCCTTTGCTGCTACCTTGCTGAGCTCAGTTTACTGGATTATAATTGTGTGAAGTACTTGCCTTCTTTGGTGGCAGCATCTGTTATATTTCTAGCGAGATTTATGTTGAGCCCGAAGATGCACCCTTGGAATTCAGCGCTTCATCAACTGACCAAATATAATCCTGCTGATTTGAAGGAATGTATTCTAAACATACATGATTTGTATCTCAGTAGGAGAGGGGGATCTTTGCTAGCTGTGAGAGATAAATACAAACAACATAAGTTCAAATGTGTGGCAACAACACCCTCTCCTCCTGAGATACCTCTTTCTTTTTTCGAATTTGGAGAGACAGATCCTTAG 1056 0.4574 MADKENIAAVLRPQREAKKRAAAALCELRPKKKRVVLGELTNLSSPAEKPTSEKRRRVGKSKAPPPPEKRDDPQMCLPYVSDIYEYLRSMEVDPSKRPLPDYVQKVQRDVNANMRGVLVDWLVEVSEEYKLVSDTLYFCVSYIDRFLSLNSLSRQKLQLLGVASMLVASKYEEIKPPEVEDFCYITDNTYSKEEVVTMEADVLKSLKFELGGPTVKTFLRRFSRVAQESIDTSDLQFEFLCCYLAELSLLDYNCVKYLPSLVAASVIFLARFMLSPKMHPWNSALHQLTKYNPADLKECILNIHDLYLSRRGGSLLAVRDKYKQHKFKCVATTPSPPEIPLSFFEFGETDP* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3107 351 SMART Cyclin_C_2 213 336 IPR004367 -
Lja5g3107 351 Pfam Cyclin, N-terminal domain 82 210 IPR006671 -
Lja5g3107 351 SUPERFAMILY Cyclin-like 71 210 IPR036915 -
Lja5g3107 351 SUPERFAMILY Cyclin-like 213 338 IPR036915 -
Lja5g3107 351 SMART cyclin_7 217 305 IPR013763 -
Lja5g3107 351 SMART cyclin_7 120 204 IPR013763 -
Lja5g3107 351 ProSitePatterns Cyclins signature. 115 146 IPR006671 -
Lja5g3107 351 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 21 347 - -
Lja5g3107 351 MobiDBLite consensus disorder prediction 49 69 - -
Lja5g3107 351 PANTHER CYCLINS 21 347 IPR039361 -
Lja5g3107 351 Gene3D - 98 211 - -
Lja5g3107 351 CDD CYCLIN 114 203 IPR013763 -
Lja5g3107 351 MobiDBLite consensus disorder prediction 37 75 - -
Lja5g3107 351 PIRSF Cyclin_A_B_D_E 1 341 IPR039361 -
Lja5g3107 351 CDD CYCLIN 213 304 IPR013763 -
Lja5g3107 351 Pfam Cyclin, C-terminal domain 213 335 IPR004367 -
Lja5g3107 351 Gene3D - 82 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3107 Lja-Chr5 60748803 60751582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3107 1 345 Core Cell Cycle Gene Families AT1G47230 60.548 3.02e-154 436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3107 5 60748803 60751582 Lja5g3107 5 60748803 60751582 ECH
Lja5g3107 5 60748803 60751582 Lja1g4124 1 52296386 52298420 PCT