Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3099 ATGGACCCATCTATAGTGAAACTTCTTGAAGATGACGAGGATGAAACAATGCATTCGCGGGTGGATGTGGAAGCTTTCCAGGCTGCTCTAAATAGAGATATTGGAGGAGATGCATCTACTTCTCAGCTTTCTGGTTCAGATTCAGTTTTGTCTCAAGAAAACAATAATACAGTTAGTCAGTCATTACCCCAGTGGCCAACTTCTAGCCTTGACAGCCAAACTGACAGTCAAAATCAAGAGCCTAAATCTGTAGTGCAGGAAGAGCAACCTTCTGAGATGGAACTGAAGCAACCTGTACCTCTTGTGGAACAACTGCAGCATGTTGCTTCACAGGATGTAAATAATGCTCTGTTGTCACAGAAACAATCTCAAGATGAATGTCACCAAGTGCCGACTGTACAAGTTTCCCTCCAAAATTCTCAAGCAAGTGGAAGTCAGAATTCTGGAAAAGATCCAGTCCTTAATAATGAAGTAGTCAAAACCCATAACCCCAGTAGTGAATCTCAGTATGCCAAGTTGCAGCAGATGAGTAATCAACAGGCTACAGTCACCGAGCAGCCAAACAACCAAACTAATCGTGGTAATCAAGTACCATTTGGTCTGTTGCTACCCGTCTTGATTCCCCAACTTGCCAAAGACAAAGCCATGCAACTTCAAACTCTATTTGCTAAACTGAAGAAAGATGAAATACAGAAAAGCGATTTTGTGCGGGTGATGAAGAATATTGTTGGGGAGCAGATGCTTAGACTAGCATTAGTAAAAGTGCAATCCCAGACAAGGTCAAACCAGGAACCTGCTGGGCAGCAGCACCCTGTAAGGACACAAACTGTTAGTTCAGGGGTAAGGCATGTGAATGATCCCCATGCTTCAGCACAGATGCATCAGAGAAGCATGGCTGCTGACCAAAATCGAATGACGTCCTCAGCGGTCCAAATTATGGAGAGAAATGCTAGGAAATCTCAGGAATTGGATGTTAAAATAGAATCTCAAGGATTGCAATCAAGCCAATTGCCATTTTCACGTAATGCTGTTAGCCAAGAAACAGAAAGATCATCAGTTCACATACAAGGGCTTAATAAGCAGCAGCAACAACATATACACTTTCCATCAGCATATGGAAGTAGTAATGATAGTTATAACCCTTTTTCTGGCGCAAGCAGTGGTTCCAATTCATTTATTAAACCACAGCAACAAGATTCACATATGAGTCAAATTCCACATCAAAGCATTAGTTCAAATCACTTAGGTGGGACAACACATATGATAGGTATACCAAAGCTTGAACAGCAGAATTCTTTAAATGACTCCAAGAAACTAGGTGGATCTGTGTGTGCTGCTGTAAACAGAGCAGCATCTCAGCAAACTTCAAATGCCTGGCAACCACCAACGAACAAAGAACAAAATTTGGGCTTTATGTCGTCTGCTTCTTATGTCAAAAAGGAGCCAGGTGACTTGTCTACAGAGCAGCAACATAGGCATAATTTGTCTAAATTGCATGGACTGCCTTCTGTTAATTCTGCACAGGTTGAAAAGGGTGGTGCTAATCAAAGGACTGTAATGGACGAGTTTTCAAGAGGTCTTCCTGCATCAACAAGCACGCCTCCTACAACTTCTGTAATGACCCAACTAGACCCTAATGTCTCTACCCCATCGAACGTATCTGGAGTTATTGCAAGGACACCTCTTAAAAAGCCTCCTCTTGCCCAGAAGAAACAACTTGACGTGCCTGGTTCCTCACCTCCTCCGCCAAGTAAAAAACAAAAATCGTCTGGGGGATCTGTAGAACAAAGCATTGAACAGCTTAATGACGTGACTGCTGTCAGTGGAGTTGATCTTAGGGAAGAGGAAGAGCAGCTATTTTCTGGGCAGAAAGAGGATAGTCGAGTTTCAGAAGCATCTCGAAAAGCTGTGCAAGAAGAGGAGGAAAGGCTGATTTTGCAGAAAGCTCCATTGCAAAAGAAGTTGATTGACATTATGGCCAAGTGTGGCTTGAAGGGTATGAGCAATGATGTGGAGAGATGCTTGTCACTGTGTGTAGAGGAAAGAATGCGTGGACTCATAAGTAACCTGATTAGACTGTCAAAACAGCGGGTTGATGTTGAGAAGACAAGACATCGGACAATTGTCACCTCAGATGTTGGGCAGCAAATACTGACAATAAATAGGAAAGTAAGGGAAGAGTGGGAGAAAAATCTGGCAGAAGAGAAGCTTCGGAAACTAAATGATGTTGAGAGCAATGCTGGAGATGATGGTGATGCGGAGAAGGATGAGAGTCGTTCTAAATCGACAAAGGTGAACAAGGAAGAGGATGGCAAGCTGAGGACGAATGCTGCAAATGTTGCTGCCCGCGCTGCTGTTGGGGGGGATGATATGCTCTCAAAGTGGCAACTTCTGGCTGAGCAAGCCAGGCAGAAACGTGAAGAGGCGATGGACACGTCATCCGGTTCGCAGCCATCAAATGATGTGAACCCGAAATCCTTATCAACATCTGGAAGAGGTACAAAGGATGACCAAGAAGGGGAGAGAAAAGGTTCTACTGCTTTTCTTGCAGCTTCAGGTTCTGCTGGAAAACATGGGAGAAATCATGCTGTTGCATCTCAAGCTAGGGTAGCTCGAAGCATCTCTGTGAAGGATGTAATTGCAGTCTTAGAGAGGGAACCCCAGATGTCTAAATCACCACTCGTACATCGCTTGTATGAAAGAATTCATTCTGATGCTCCAGCTGAATAA 2730 0.4374 MDPSIVKLLEDDEDETMHSRVDVEAFQAALNRDIGGDASTSQLSGSDSVLSQENNNTVSQSLPQWPTSSLDSQTDSQNQEPKSVVQEEQPSEMELKQPVPLVEQLQHVASQDVNNALLSQKQSQDECHQVPTVQVSLQNSQASGSQNSGKDPVLNNEVVKTHNPSSESQYAKLQQMSNQQATVTEQPNNQTNRGNQVPFGLLLPVLIPQLAKDKAMQLQTLFAKLKKDEIQKSDFVRVMKNIVGEQMLRLALVKVQSQTRSNQEPAGQQHPVRTQTVSSGVRHVNDPHASAQMHQRSMAADQNRMTSSAVQIMERNARKSQELDVKIESQGLQSSQLPFSRNAVSQETERSSVHIQGLNKQQQQHIHFPSAYGSSNDSYNPFSGASSGSNSFIKPQQQDSHMSQIPHQSISSNHLGGTTHMIGIPKLEQQNSLNDSKKLGGSVCAAVNRAASQQTSNAWQPPTNKEQNLGFMSSASYVKKEPGDLSTEQQHRHNLSKLHGLPSVNSAQVEKGGANQRTVMDEFSRGLPASTSTPPTTSVMTQLDPNVSTPSNVSGVIARTPLKKPPLAQKKQLDVPGSSPPPPSKKQKSSGGSVEQSIEQLNDVTAVSGVDLREEEEQLFSGQKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVERCLSLCVEERMRGLISNLIRLSKQRVDVEKTRHRTIVTSDVGQQILTINRKVREEWEKNLAEEKLRKLNDVESNAGDDGDAEKDESRSKSTKVNKEEDGKLRTNAANVAARAAVGGDDMLSKWQLLAEQARQKREEAMDTSSGSQPSNDVNPKSLSTSGRGTKDDQEGERKGSTAFLAASGSAGKHGRNHAVASQARVARSISVKDVIAVLEREPQMSKSPLVHRLYERIHSDAPAE* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3099 909 Pfam RCD1-SRO-TAF4 (RST) plant domain 195 256 IPR022003 -
Lja5g3099 909 MobiDBLite consensus disorder prediction 811 831 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 161 195 - -
Lja5g3099 909 Coils Coil 792 812 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 743 774 - -
Lja5g3099 909 CDD TAF4 596 897 IPR007900 GO:0005669|GO:0006352
Lja5g3099 909 ProSiteProfiles RST domain profile. 190 261 IPR022003 -
Lja5g3099 909 MobiDBLite consensus disorder prediction 743 776 - -
Lja5g3099 909 Pfam Transcription initiation factor TFIID component TAF4 family 601 897 IPR007900 GO:0005669|GO:0006352
Lja5g3099 909 MobiDBLite consensus disorder prediction 802 869 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 525 556 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 259 280 - -
Lja5g3099 909 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 39 903 IPR045144 GO:0005669|GO:0006352
Lja5g3099 909 MobiDBLite consensus disorder prediction 329 420 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 35 96 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 35 86 - -
Lja5g3099 909 PANTHER IP01149P-RELATED 39 903 - -
Lja5g3099 909 MobiDBLite consensus disorder prediction 525 596 - -
Lja5g3099 909 Gene3D Histone, subunit A 646 691 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3099 Lja-Chr5 60654365 60667773 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3099 5 60654365 60667773 Lja5g3099 5 60654365 60667773 ECH