Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3096 ATGGCTATGGAAGCCCTCAACTCACCCACCACCACCGCCCCATCCTTCACGTTCAACGACCACCCAACCCTCCGTCACCCGGCGGAGCCGTGGGCAAAACGGAAACGCTCCAAGCGATCTCGTTCATGCTCCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCGCCGCCACCACCACTGCCACCCCTCCGCTGCAACCGGCAACCGCTCCTTCCGGTTCCTCCAGGCTCAGCTACAAGTGCTCCGTGTGCGACAAGGCCTTCCCTTCCTACCAAGCGCTCGGCGGACACAAGGCCAGCCACCGCAAACACTCCGGCGGCGGGGGTGAAGATCATTCCGCTGGCGCCACCTCCTCCGCCGTTGCCACCACCACAAGTTCTGCTAACACCGGAAGTGGAGGTAAGGCTCATGAGTGTTCCATCTGCCACAAATCCTTCCCCACCGGCCAGGCCTTAGGAGGACACAAGCGTTGCCACTATGAAGGTGGTGGTGGGAGCAGCAGCGCCACCGCGTCAGAAGGTGTTGGATCCACCCACACCGTGAGCCACAGCCACCACCGTGACTTCGATCTGAACATACCCGCTCTGCCGGAGTTTCCAAGCACCAAGGCCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTGATGAAGAAGAAGCAACGTGTTTTCATGATACCCAAGATCGAAATCCCTCAACTCCATTGA 720 0.6056 MAMEALNSPTTTAPSFTFNDHPTLRHPAEPWAKRKRSKRSRSCSEEEYLALCLIMLARGGAATTTATPPLQPATAPSGSSRLSYKCSVCDKAFPSYQALGGHKASHRKHSGGGGEDHSAGATSSAVATTTSSANTGSGGKAHECSICHKSFPTGQALGGHKRCHYEGGGGSSSATASEGVGSTHTVSHSHHRDFDLNIPALPEFPSTKAGEDEVESPHPVMKKKQRVFMIPKIEIPQLH* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3096 239 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 226 IPR044653 GO:0003700
Lja5g3096 239 Gene3D Classic Zinc Finger 82 164 - -
Lja5g3096 239 MobiDBLite consensus disorder prediction 100 139 - -
Lja5g3096 239 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Lja5g3096 239 PANTHER ZINC FINGER PROTEIN ZAT10 1 226 - -
Lja5g3096 239 MobiDBLite consensus disorder prediction 1 19 - -
Lja5g3096 239 MobiDBLite consensus disorder prediction 121 139 - -
Lja5g3096 239 MobiDBLite consensus disorder prediction 167 191 - -
Lja5g3096 239 Pfam C2H2-type zinc finger 84 108 - -
Lja5g3096 239 Pfam C2H2-type zinc finger 141 165 - -
Lja5g3096 239 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Lja5g3096 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Lja5g3096 239 SUPERFAMILY beta-beta-alpha zinc fingers 84 164 IPR036236 -
Lja5g3096 239 MobiDBLite consensus disorder prediction 170 184 - -
Lja5g3096 239 SMART c2h2final6 84 106 IPR013087 -
Lja5g3096 239 SMART c2h2final6 142 164 IPR013087 -
Lja5g3096 239 MobiDBLite consensus disorder prediction 1 39 - -
Lja5g3096 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3096 Lja-Chr5 60620457 60621640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3096 1 235 C2H2 Transcription Factor Family AT1G27730 51.822 2.44e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g3096 zf-C2H2_6 9.3e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3096 5 60620457 60621640 Lja5g0441 5 3874432 3875756 ECH
Lja5g3096 5 60620457 60621640 Lja5g3096 5 60620457 60621640 ECH
Lja5g3096 5 60620457 60621640 Lja1g4106 1 52081387 52082486 PCT