Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3095 ATGGAACCTGTAGGAGTTTTCCCTGATGGAGAATGGGATTTCTTTAGAAGAATGTTTGCAGGTGAGGAGCAAGGTTACTCAAATTTTGCTCTGCAAAATGATGAACTGAACAACATTGGAACACAATTTTGTTCTGCTCCTGAAACTGGTGAAAATGAGCTCATGTTTTATTCTTTAGATGCTCACAACTCAAACTATTCACAGCACATTTCTCAGGAAAATAGTTACAGTAGCAATTGCAGTGGTGACACTGTCTTCAACTATTTTAGTTACCCTGACCATATGCTAGCAAACAATTATACTTGTGGTGCTGCATCCATGGATTTTTGCATGGATGAGAATTATTTTGCATCTTTTGTCCCATCACTACTTGCTGACATTGCAATGGAAGAGAATGTCAACAACTTGAGTGAGCATGTGGGGAGTGAAAGATTGGAGAATTCTGCTGATTACAGACATCAAATTCAGTTGCAGCTGAAAAGGAAGCTTGATGTGCTAGAACCAGAGGTTCCTGCTAATGATAAAACAAACAACAGAGCTGAGAGTCAGAAGAAAAAACCTCGCCTTTCAAAAGATGGCCAAGGTTGCATGAAAAATTCAAGGTCTAAGAAGAACCTGCAGAAACTTGCAAGCAATGGAGAGGAGGCAGAAGAGACTACTACAGGATCAAATGGACAAAGCTCCTGTAGTAGCATCACAGAGGATGATAATGCTTCTATGGAAAATAGTGTAGGAGCTACTTCAATTGGAAAGACGCGAGCCAGTAGGGGATCAGCAACAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAGAAAATAAATGAGCGACTGAGAATCCTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGGTTCAGATCAAGCTTTTAAGCTCAGATGATATGTGGATGTATGCTCCTCTTGCTTATAATGGACTTGACATTGGGCTCAATCTCAACCTGAACAGTTCTCCACCACTATGA 1035 0.4029 MEPVGVFPDGEWDFFRRMFAGEEQGYSNFALQNDELNNIGTQFCSAPETGENELMFYSLDAHNSNYSQHISQENSYSSNCSGDTVFNYFSYPDHMLANNYTCGAASMDFCMDENYFASFVPSLLADIAMEENVNNLSEHVGSERLENSADYRHQIQLQLKRKLDVLEPEVPANDKTNNRAESQKKKPRLSKDGQGCMKNSRSKKNLQKLASNGEEAEETTTGSNGQSSCSSITEDDNASMENSVGATSIGKTRASRGSATDPQSLYARKRREKINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNLNSSPPL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3095 344 Pfam Helix-loop-helix DNA-binding domain 268 308 IPR011598 GO:0046983
Lja5g3095 344 Gene3D - 260 323 IPR036638 GO:0046983
Lja5g3095 344 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 342 - -
Lja5g3095 344 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 342 - -
Lja5g3095 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Lja5g3095 344 CDD bHLH_AtIND_like 259 321 - -
Lja5g3095 344 Coils Coil 199 219 - -
Lja5g3095 344 MobiDBLite consensus disorder prediction 178 192 - -
Lja5g3095 344 MobiDBLite consensus disorder prediction 195 262 - -
Lja5g3095 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 323 IPR036638 GO:0046983
Lja5g3095 344 MobiDBLite consensus disorder prediction 166 269 - -
Lja5g3095 344 SMART finulus 264 313 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3095 Lja-Chr5 60588910 60590541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3095 200 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 64.789 8.28e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g3095 HLH 1.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3095 5 60588910 60590541 Lja5g3095 5 60588910 60590541 ECH