Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3094 ATGGCTTCACTCGAGCAGCCACCGAAGAAGCGCAAGCTCTACGACTCTCTCCCGGAGTCTCCGCCGTCGCCTCCACCTCTGCCGCACGAACCAAGCACACCGCCCTCCCCTCAAACCCTACCTCATTCTCCTCCTCCTCCTCCGCCACCGTCAACTCCGCCGCTGTCTCAGGATGAGATTCTCGCCAAGCGGAGGAACAAGGACGAAATTCGAACCGTCTATGAAGTTTACAAGCGGATCAAGTTTTGCTTGCTCCGCAAAGATGGTCCCTCTGCCATTCCGGACCTTGAACAGGGCTACCTCGCTCTCATCACTTCTTCCAGAGGTTGTATGAGTGTACAAAGAATTGTGGCCGATTTTATTCCTCAATATGCATGTCACAGTCCAACAGCTTTGGAAGCTGCAGCTAAAGTGGTTATTAATATGCATAACTGGAGTTTGGCATTGATCAATAGAGGAGAGGACTTTGGTGGTATTGCATTTGAAACTGCTAGAACCTGTATTTCTGGCCTTGCTGATGTTTGCTGCATTGCTTCTTCAGTAGCACCAACATCAGCTGTAATAAGAGGAATTTGCTCAGCAGTTTTTCAAAATGTGCTCACCTTTTTTATTGCCTTGTTTGAGGGAAAGGATGTCTTACAGATGGTTAACAAGAATTTCCTCAATATGCAAGACACCCCTGAGGTATTTTATGAGCTGAAACAAAAGATTTTGGATGAAGATGAATCTTCATTGACTAAATTATCCAAGTTTCGTGCATTATGTCTACTTTGGATATTCTTCTCTTGTCCGAAAGACTTGCTTTCAGCTTGTATAGATCTCTTAGGCTCTCCTACAAAAGAGAGAAATTCTGATGAAGGACAGCGCTTTCTGAACCTGGTGACTAGCACGTTTGTTGATGATGAAGCAGTTCACCTTTTGGATGAAGCAATTGATGGACCTAAATCATGTACAGATTCTACTGGGGCAGGCATCAGTGGTGAGGCTGGGGAGAAAATTATGACCGATGACAACCGTGTTTCTGATAGTGATTCGTCTGTTGGAAAGAGCTGCCTTCTTATGCTGGCTCTTAACAAGGACCCGTCACTGCGGAAATGGATGTTGCGCAGATGTAAGAAATTACTTGACTTGCTTACTAATGCTTCACTAGAAATTAGATCAGTGTTGCAAGGAATTCTTGGAATGTTTGCTCAACAGACAGATTTGGAAGATTGTCACTTAGATAGTGATGAAGATATATCTGATTCTTCAATTTACATGAATAGGAATTATACGGTTACTAGGATATCTAAGGAACATGAAAGCATTGGTGAAGCATCAGGAAAAGGTTCACATTTTGATAATGGAGTCTCAAGGTCCATGGGCGTTGAGATGGGTGAGGAAGGCAATATGCTCCATGTTAGGTGCTCCACACCTAGGGACTCAGTAACCCATCAGATATTCTCTCCTGCAGTTAAAACCCAAGTAGACTATAGGTTTAATTTATTTGATGGTAGAAATGATTCCCCGAATGTTGAGAAAACGCAAGGTTTAAATATGAGTTTGAATTCACCTCTGTTGAGGTCCTCTAGCGGAGCTTTTAGAAATGTTCATGCTTCTCCTAGTCATCATTTTATGTCGCCAACTGCTTCAACAAGAAGTCAAATTGCCTGGTGCTGTGACGGGGATCCTGCAGCCATGGATGTTGTCTCTGCTTCTAAGCAGCTATGGGTAGGTTATGTAGCGCCTGACGTACCTGAAAACCATATCAGGTTTCAATTAGAGAGGTTTGGCCCTATTGAACGATTTATTTTCTTCCCAGTGAAGGGATTTGCATTGGTTGAGTACAGAGGGATCATTGATGCGATAAAAGCTCGACACTATTTGCCTGGAAATTTTCCTTGCCGAGTGAAATTCATGGATATAGGGCTTGGTACCAGGGGTGCAGTCAATGGTATTGCTGTTGGCATTAGTTCTCATATATATGTTGGAAATATTTCCAGTCAATGGGCCAGGGATGAGATCCTGCATGAATCAAGGAAAGTAATCCACAAGGGTCCTCTCGCAGTGATCGATCTTAGCTGTGAGGGTGCATTACTTATGGAGTTTGAAACTCCGGAAGAAGCTGTCTCTGTCATGTTGCATCTGAGACAACTCCGAAGAGAGAGAAATAGTTATAATCAGCATTTTGGTCCAGGGACAGTTAATACTGGATTTGGGCATGCTTATATTGATGGTGCAAGACCGTTACCCACTCCTCCCCGTCTTGATCCTAAAGTCAACAACTCTGCTGGATCACCTCATGCTCGAACTTTACCTGAGAGCCCTGCTGACGGCAGTCAAACGAGGATGTCTCGCTTGCATAACTTACTATCTTCACTGCGTACTAAGTATAATATTAATCAAAGCATAGGTCTACATGATAACTATATGACTGGAGATACTTCTGCTTCTTCCATGCGTGAGGAAGATACAGTGCCATCCAGCACTCTGTGGATAACTATTTCTCGTAGCAGCTTACCGTTCCTCACAGACGAGGAGCTAATGGGCATTTGCAACCTGGCCATTGGGAACACTGGCTCCATTGTGAGGCTGACACAAGCAAACATGCAGATGGGATGTGGTTGGTTGGTTGAGTGCAGTAATGTTGATGGTGCAGTTTCTGTTCTAAGGAATCTTCGTGGTTGTCCAGGATTGTTCTTCCAGATAGAATTCAGCAAACCAGGAAATCAAAATGCTGTACCATTTTCAATTAAACCAGAAAACAACGGCATGGAGCTTGTATCCCCCAGAATAAATACTGAGAATCATAATAGTGGAGTACATGGTGCACCTCTGTCTCAGTCAAACTGGCACTTTCCTGATTCCAGGGAGATGTCAGAAGTTGGAGCAAGGAATGATAATGTATCACTGGATCCACATCGAGGAGGTAATGCTCCACATTTATTCCCTGGAACACAAGGACCTTCCATTCTGCCACCTCAGCAAATTCAGTCATCTCCTTTCATTCGCCCTGTTTATGTTCCTCCAAATGGTCCGTGGGATCCACGGGGAACAAATAATCATTTACCTGTCAACCAATTTAACACAGGAGTAATGCCAAATAATTTTCATGGTGGTGGTGTGGCGAGTCCTTTTATACCTGTGTCTGTGACTCCACTTGCTCAGATACAAGGAGCTCCAATCCAGCCCTATAACCAGCAGGTTCCTCCACCAATTGTACCCCCACCTATACCATCTTTGCCACCTCCTCAGCCTGAAATGCCACATCCATTTCCTCCTTCTCCACCACCTCTACCCCTGACACAGCCACCCTTGGTTCCTCCACCTCCACCACCTGGTTCTCCTCCACCTCCTCCTCCACCACTGCCTGTCCAAGAAGTAGTCAGTATGGAATGTTCAGGGCAGTCTCTGCAGTATCAGTGGCAGGGCAATCTCTGTAAAAGTGGGGTTAACTACTGCACAATTTATGCATGCAGAGCAGATTCAGATATTTGCAGATATTCAAATACCATACCTGAGCCTGCTGAATGGCCTACAAAATTAGACATGACTAAACGCACCGATTTTCGACATGTGAAATCAACATTAGCTGCTACACCATCTCATAGAAGGGAAGTGTGCCATTTGATCCCATCTTCCACTAGTGACCACAAAAGGTTTCAGGATTTCGTATCATACTTAAAGCAGAAGGATTGTGCTGGAGTTATCAAAATCCCAGCTTCAAAATCCATATGGGCAAGGCTGCTATTCATACTCCCCCACTCACTTGAAACATGCTCTTTGCTTTCTATTGCTCCTGATCCATCTGATTGCCTCATTGCTTTGGTTCTTCCCAAGGAAACAAACTTTGATTGGATATGA 3843 0.4442 MASLEQPPKKRKLYDSLPESPPSPPPLPHEPSTPPSPQTLPHSPPPPPPPSTPPLSQDEILAKRRNKDEIRTVYEVYKRIKFCLLRKDGPSAIPDLEQGYLALITSSRGCMSVQRIVADFIPQYACHSPTALEAAAKVVINMHNWSLALINRGEDFGGIAFETARTCISGLADVCCIASSVAPTSAVIRGICSAVFQNVLTFFIALFEGKDVLQMVNKNFLNMQDTPEVFYELKQKILDEDESSLTKLSKFRALCLLWIFFSCPKDLLSACIDLLGSPTKERNSDEGQRFLNLVTSTFVDDEAVHLLDEAIDGPKSCTDSTGAGISGEAGEKIMTDDNRVSDSDSSVGKSCLLMLALNKDPSLRKWMLRRCKKLLDLLTNASLEIRSVLQGILGMFAQQTDLEDCHLDSDEDISDSSIYMNRNYTVTRISKEHESIGEASGKGSHFDNGVSRSMGVEMGEEGNMLHVRCSTPRDSVTHQIFSPAVKTQVDYRFNLFDGRNDSPNVEKTQGLNMSLNSPLLRSSSGAFRNVHASPSHHFMSPTASTRSQIAWCCDGDPAAMDVVSASKQLWVGYVAPDVPENHIRFQLERFGPIERFIFFPVKGFALVEYRGIIDAIKARHYLPGNFPCRVKFMDIGLGTRGAVNGIAVGISSHIYVGNISSQWARDEILHESRKVIHKGPLAVIDLSCEGALLMEFETPEEAVSVMLHLRQLRRERNSYNQHFGPGTVNTGFGHAYIDGARPLPTPPRLDPKVNNSAGSPHARTLPESPADGSQTRMSRLHNLLSSLRTKYNINQSIGLHDNYMTGDTSASSMREEDTVPSSTLWITISRSSLPFLTDEELMGICNLAIGNTGSIVRLTQANMQMGCGWLVECSNVDGAVSVLRNLRGCPGLFFQIEFSKPGNQNAVPFSIKPENNGMELVSPRINTENHNSGVHGAPLSQSNWHFPDSREMSEVGARNDNVSLDPHRGGNAPHLFPGTQGPSILPPQQIQSSPFIRPVYVPPNGPWDPRGTNNHLPVNQFNTGVMPNNFHGGGVASPFIPVSVTPLAQIQGAPIQPYNQQVPPPIVPPPIPSLPPPQPEMPHPFPPSPPPLPLTQPPLVPPPPPPGSPPPPPPPLPVQEVVSMECSGQSLQYQWQGNLCKSGVNYCTIYACRADSDICRYSNTIPEPAEWPTKLDMTKRTDFRHVKSTLAATPSHRREVCHLIPSSTSDHKRFQDFVSYLKQKDCAGVIKIPASKSIWARLLFILPHSLETCSLLSIAPDPSDCLIALVLPKETNFDWI* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3094 1280 MobiDBLite consensus disorder prediction 18 55 - -
Lja5g3094 1280 MobiDBLite consensus disorder prediction 1 57 - -
Lja5g3094 1280 MobiDBLite consensus disorder prediction 1058 1119 - -
Lja5g3094 1280 SUPERFAMILY RNA-binding domain, RBD 556 626 IPR035979 GO:0003676
Lja5g3094 1280 MobiDBLite consensus disorder prediction 757 775 - -
Lja5g3094 1280 CDD RRM3_Spen 569 634 - -
Lja5g3094 1280 Pfam SPOC domain 1129 1271 IPR012921 -
Lja5g3094 1280 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1279 - -
Lja5g3094 1280 Gene3D - 558 640 IPR012677 -
Lja5g3094 1280 MobiDBLite consensus disorder prediction 743 775 - -
Lja5g3094 1280 SMART rrm1_1 568 631 IPR000504 GO:0003723
Lja5g3094 1280 MobiDBLite consensus disorder prediction 1056 1119 - -
Lja5g3094 1280 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1279 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3094 5 60573288 60584906 Lja5g3094 5 60573288 60584906 ECH