Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3091 ATGGGAACCGAGAGCTACACTTACATGGGTCGCAGCTTCAGCGCGCTATCCATCAACGACGATTCATCTTCCTCCGCTTTCAGCGACTGCAACAGCGACAGATCTGGCGAATTCGCCACCGCTTCTTCCCAAACCCGCCGCCGTCTCCTCATCGCTTGCGCCTCCGAGAATTCCGATGACCTCATCCTGCAGCTTGTCGACGATCTCCAATCCTCCTCCGTCGACGATCAGAAACAAGCCGCCATGGAAATCCGATTACTCGCTAAGAACAAGCCTGAGAATCGCATCAAAATCGCCAAAGCCGGCGCAATCAAACCGCTAATTTCGCTTATTTCCTCGCAAGACCTCCAGCTTCAGGAATACGGCGTCACCGCGATTCTCAACCTCTCCCTCTGCGACGAGAACAAGGAGTTGATAGCTTCCTCCGGAGCGATTAAGCCTCTGGTGAGAGCGTTGAAAGCAGGGACGCCGACGGCGAAGGAGAACGCGGCGTGCGCGTTGCTCCGCCTCTCACAGGCGGAGGAGAGCAAGGCGGCGATTGGGAGGTCCGGCGCCATTCCGCTACTGGTGAGCCTCCTGCAAACCGGCGGTATCCGCGGGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTCTGCTCGGTGAGGGAGAACAAGATCAGGGCGGTGAAGGCGGGGATCATGAAGGTTCTGGTGGAGCTGATGGCGGACTTTGAGTCAAACATGGTGGATAAGTCAGCGTACGTGGTGAGCGTGCTGGTGTCGGTGGCGGAGGCGAAGGCGGCGCTGGTGGAGGAAGGCGGCGTTCCGGTGGTGGTGGAGATCGTGGAGGTTGGGTCTCAGAGACAGAAGGAGATAGCGGTGGTTATTCTGTTACAGCTATGCGAGGAAAACGTGACCTATCGAACCATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTCTGACTCAGAACGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTGATTGAGCTGCTGCGGCAACCGAGATCTGGGAGCGCCGCTGCACGTACGGCGGCGGAAGTGGTGGCATGA 1062 0.5847 MGTESYTYMGRSFSALSINDDSSSSAFSDCNSDRSGEFATASSQTRRRLLIACASENSDDLILQLVDDLQSSSVDDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALKAGTPTAKENAACALLRLSQAEESKAAIGRSGAIPLLVSLLQTGGIRGKKDASTALYSLCSVRENKIRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVAEAKAALVEEGGVPVVVEIVEVGSQRQKEIAVVILLQLCEENVTYRTMVAREGAIPPLVALTQNGTNRAKQKAEKLIELLRQPRSGSAAARTAAEVVA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3091 353 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 345 - -
Lja5g3091 353 SUPERFAMILY ARM repeat 58 333 IPR016024 -
Lja5g3091 353 SMART arm_5 132 172 IPR000225 GO:0005515
Lja5g3091 353 SMART arm_5 214 254 IPR000225 GO:0005515
Lja5g3091 353 SMART arm_5 297 337 IPR000225 GO:0005515
Lja5g3091 353 SMART arm_5 255 295 IPR000225 GO:0005515
Lja5g3091 353 SMART arm_5 173 213 IPR000225 GO:0005515
Lja5g3091 353 SMART arm_5 91 131 IPR000225 GO:0005515
Lja5g3091 353 Gene3D - 213 349 IPR011989 -
Lja5g3091 353 PANTHER U BOX DOMAIN-CONTAINING 5 345 - -
Lja5g3091 353 Gene3D - 30 202 IPR011989 -
Lja5g3091 353 Pfam Armadillo/beta-catenin-like repeat 175 213 IPR000225 GO:0005515
Lja5g3091 353 Pfam Armadillo/beta-catenin-like repeat 133 171 IPR000225 GO:0005515
Lja5g3091 353 Pfam Armadillo/beta-catenin-like repeat 92 130 IPR000225 GO:0005515
Lja5g3091 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 102 144 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3091 Lja-Chr5 60552729 60554620 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3091 2 344 U-box Gene Family AT2G23140 41.772 2.82e-81 258