Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3083 ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTTGAAGAGGCGCCGCAGTCACCGGAATCCCTGGCAACAAGGGATTTCTCTGCTAGTGGACTATCTTCAAATTCAAGGACAGGGGATTGTGAATCCAAATTCAGTGAGGCCCAAGTAGAAGATGCTGAATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGAGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTGTTTCAAGGTATAGACATCAAGGCTATAAGCCCAAGGATGATTAGGGCTATAACTGAAAGAACCAAGCAAAGAAAACCGCGTTCAAAGGCCGATAATGTGCTTCCAAATTTGATGTCAATGCATTCAGTAAGCTTGCTTCTTGAGGCAATTTATCTTAAAGCCAAATCCTTAGAGGAACTTGGGCAATACACTGAGGCTGCAAAGGAGTGCAGAATAATTGTGGATACAGTTGAATCTTCTTTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCCAGAAATTTTCCACAGAGCATTGGAGTTGCTTCCAAATCTATGGATCCAGGCAGGCTTTCTAGATGATGCTGTCACCGCTTATCGGCGTGCTCTGACCAAGCCCTGGAATTTGGAGCCAAGGAGGTTGGCTTGTCTACAAAAGGATTTAGCCACTACACTACTCTATGGTGGTGTTGAAGTAAACCTACCCCCTCAGTTGCAAGTGAAAGGTCCAAGTCCAACAACACCTTTGAGTAATATTGAAGAGGCAATACTTTTGCTGTTAATACTCTCAGGAAAGATGGCACTTCAGGAGATAGAATGGGATGCTGAAATAATGGATCATCTCACATTTTCTCTTTCAATTACTGGAATATTTGAATCACTGGCAGATCATGTATTGCAGATCCATCCAGGTATCTATGACCGAGCTGAGAGGTGGTACTTTCTCGCACTTTGTTACAGTGCAGCAGGACACAATGAAACAGCTTTGAACCTTTTGAAGAAAGCTTGTGGTAGTTCTGAAGCAAAGAATAGACCCCATTTTCCTTCATTTTTGTTTTGTGCAAAACTGTGTTCCCAATATCCAATCCATGCTCATGAAGGCATTAAATTTTCCCGGGAAGTTATCGATCTAGCCCAGCATCAAAATGAGCACTTTTTGAGCCAAGGGAGAAAATTTCTTGGTATCTGCCATGGAGCAGCGGCTAGAATATCTGTACTGGATTCTGAAAGAGTTTCATTTCAAAGAGAGTCTTTAAACTTTCTAAACAAAGCTGTTTTAAACGGAAATGACGACCCTGAAGCAATATTCAGCCTTGGACTGGAAAATGCAGTTCAAAGGAATCTAAATGCAGCTCATGACAACATGATGATGTACTCAGACATGATGGTTGGAAGCTCTAGAAGAGGTTGGAAGCTGTTAGCACTTATAGTATCTGCACAGCAGAGGTTTAAGGATGCAGAAACTTTAGTTGATTTTGCTTTAGATGAGTCTGGGAGAATAGATCAGTTAGAACTACTAAGATTGAAAGCTGTGCTTCAAATTTCTCAGCAGCAACCCAAACAAGCAATAGAGACCTACAGAATCTTGCTAGCAGTAATACAAGCAAAAAAGGAGGCTTGGCTTCAAGCTAAGGAGGAGCTCCATCAAGCAAAAATATTCAGGGATGAGGAATTAACAGAACAGAAGTTAGAAATGGAAGCTTGGCAGGATTTGGCAACCATTTATGCAGATCTTAGATCTTTTCTTGATGCAAAAGCTTGCGTTGATAAAGCCAAGTTGATAGAATTTTTTGCTCCTAGGAGTTGGCATACAACAGGGAAGTTGTTTGAAGCTCAATCATTATACAAGGAGGCCTTTGTTTCCTTCTCAGTTTCATTGTCAATAGAACCGGATTACATTCCCAGCATCATTTCAACTGCAGAATTGTTGATTAAACTTGGTAAAGAATCACTTCCAGTTGCAAGAAGTTTCTTGATGAATGCTTTGAGATTGGAACCCACAAACCATGATGCTTGGTTCAAACTCGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCTGCAGATTGCTTTCAAGCTTCACATGAGCTGAAGCTATCAGCTCCAGTGCAAAAATTTGAGTGA 2163 0.4133 MLCACSGEQFKFEEAPQSPESLATRDFSASGLSSNSRTGDCESKFSEAQVEDAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKAISPRMIRAITERTKQRKPRSKADNVLPNLMSMHSVSLLLEAIYLKAKSLEELGQYTEAAKECRIIVDTVESSFPNGMPEGIGEDCKLPEIFHRALELLPNLWIQAGFLDDAVTAYRRALTKPWNLEPRRLACLQKDLATTLLYGGVEVNLPPQLQVKGPSPTTPLSNIEEAILLLLILSGKMALQEIEWDAEIMDHLTFSLSITGIFESLADHVLQIHPGIYDRAERWYFLALCYSAAGHNETALNLLKKACGSSEAKNRPHFPSFLFCAKLCSQYPIHAHEGIKFSREVIDLAQHQNEHFLSQGRKFLGICHGAAARISVLDSERVSFQRESLNFLNKAVLNGNDDPEAIFSLGLENAVQRNLNAAHDNMMMYSDMMVGSSRRGWKLLALIVSAQQRFKDAETLVDFALDESGRIDQLELLRLKAVLQISQQQPKQAIETYRILLAVIQAKKEAWLQAKEELHQAKIFRDEELTEQKLEMEAWQDLATIYADLRSFLDAKACVDKAKLIEFFAPRSWHTTGKLFEAQSLYKEAFVSFSVSLSIEPDYIPSIISTAELLIKLGKESLPVARSFLMNALRLEPTNHDAWFKLGLVSKMEGSLQQAADCFQASHELKLSAPVQKFE* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3083 720 PANTHER PROTEIN NPG1 1 719 IPR043376 -
Lja5g3083 720 SMART tpr_5 611 644 IPR019734 GO:0005515
Lja5g3083 720 SMART tpr_5 681 714 IPR019734 GO:0005515
Lja5g3083 720 SMART tpr_5 515 548 IPR019734 GO:0005515
Lja5g3083 720 SMART tpr_5 135 168 IPR019734 GO:0005515
Lja5g3083 720 SMART tpr_5 321 354 IPR019734 GO:0005515
Lja5g3083 720 MobiDBLite consensus disorder prediction 14 41 - -
Lja5g3083 720 MobiDBLite consensus disorder prediction 21 41 - -
Lja5g3083 720 Gene3D Tetratricopeptide repeat domain 34 356 IPR011990 GO:0005515
Lja5g3083 720 Pfam Tetratricopeptide repeat 49 91 - -
Lja5g3083 720 Coils Coil 58 78 - -
Lja5g3083 720 ProSiteProfiles TPR repeat profile. 611 644 IPR019734 GO:0005515
Lja5g3083 720 PANTHER PROTEIN NPGR1 1 719 - -
Lja5g3083 720 SUPERFAMILY TPR-like 51 466 IPR011990 GO:0005515
Lja5g3083 720 SUPERFAMILY TPR-like 572 708 IPR011990 GO:0005515
Lja5g3083 720 Gene3D Tetratricopeptide repeat domain 421 715 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3083 Lja-Chr5 60482944 60486650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3083 1 719 Calmodulin-binding Proteins AT1G27460 57.836 0.0 835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3083 5 60482944 60486650 Lja5g3083 5 60482944 60486650 ECH
Lja5g3083 5 60482944 60486650 Lja1g4100 1 52027129 52031024 PCT