Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3079 ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACTGCGGATAACCGAGTGTTCCACAAAGCTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTCAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGCAGGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTTGAAGGGACACCAAAAGTTGCCAAACCGGAAAGAAATATTGATAATGAGAAACCTGCAGCAGCCAAAGTCTCAAGCATGTTTGGTGGAACCAGGGATAAATGTGCAGGTTGTCAGAAAACGGTGTATCCTACTGAGAAGGTTACTGTGAATGGAACTCCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGTTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAACACCACCACATCCAACTGATTAAGGAGAAGGGAAATTTAAGCCAGCTGGAGGGTGACCATGAGAAGAATGTAGTGCAAGGGGAAATTAATGGTGACAAAGTTGCGGCTTAA 588 0.4405 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKVAKPERNIDNEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNVVQGEINGDKVAA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3079 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lja5g3079 195 Pfam LIM domain 10 64 IPR001781 -
Lja5g3079 195 Pfam LIM domain 110 164 IPR001781 -
Lja5g3079 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lja5g3079 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lja5g3079 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lja5g3079 195 Gene3D Cysteine Rich Protein 105 174 - -
Lja5g3079 195 Gene3D Cysteine Rich Protein 4 74 - -
Lja5g3079 195 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lja5g3079 195 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 1 183 - -
Lja5g3079 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lja5g3079 195 CDD LIM2_SF3 110 170 - -
Lja5g3079 195 SMART lim_4 9 61 IPR001781 -
Lja5g3079 195 SMART lim_4 109 161 IPR001781 -
Lja5g3079 195 CDD LIM1_SF3 6 68 - -
Lja5g3079 195 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lja5g3079 195 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3079 Lja-Chr5 60458157 60460349 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lja5g3079 LIM 1.5e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3079 5 60458157 60460349 Lja5g3079 5 60458157 60460349 ECH
Lja5g3079 5 60458157 60460349 Lja1g4096 1 52007553 52011219 PCT