Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3076 ATGGCATTGCAATTGTTCTCCCCCAACCCAGAACAACAACAAGAAGATGCTGCAGACACACTCATCAAGCTCGAATCAGCATGTTCTGACATGAGATCCCTCCTCCAATCCTCAGAAAAAATGGAACAAAACTTGGAAACCATGGAAACAAGGCATGATCTTTTACAAGGAACACTCTCATCAGCATCCAGAAAGATCGCCCCTCTACAATCCTTAGCCATGTCGAGAAAAGCACTCGACACAAGAATACACAGAGCAATTTCCCCTGCTCTTGCACTGCTTCAAACTTTCAAGCTTGCAGAGTCACTCCAAAATGACCTCCTTGATCTCTCAACAAAACTCTCAGAAGAGAACACACATCAGAAAAGGCTCCACAAGCTTCTAGATTACATGGATTGCGTTGATCGGTTAAACGAGGCGATTAACGCGATATGCCGAGACGTTGAGCCGGTGATTCAGAAGCTTCAAGAGGTGGTGGAGCTGAGAGAGGCGCTGGTTACTCTCAAGGCGCTTTATGAGACTGAGGTGGATGAGATGAGGTTTGAGGGTTTGCTTGATCAGGCTTTGGTTCACATGCAAGATGAGTTTGAGGCTCTGTTGCTGAAGATGAAGCATAGGAAGCTAGGAGACATGTCACAAGAACATGTTGGCAATGGCACTGAGGTTGTTAAGGTTGCATGTGATTTGGGATCAGAACTGGAAATTGAAGTCTTGAGACGAATTTCAAACATTCTTGCCAACAATGATTGCCTGGATATATGCATTGACATATACGTTAAGGGGAGATATAGAAGGGCTGCAAAAGCATTGATGAAGCTAAGCCCTGATTACCTGAGAACATACACACCAGAAGGAATCGATGAAATGGAGTGGGAAAGCTTAGAGACCGCAATAACCCTTTGGATCCAACACCTTGGAGTTGCTGCTAACAAGGTCCTCCTCTCAGAAAAGAAACTCTGTGAGAGGGTCTTGGGTGAAACTATGGAAGGACTAGTCTGGCCTGAGTGCTTCGTGAAAATTTCAGACAAGATCATGGCTGTGTTTTTTCGGTTCGGAGAAGGTGTTGCCAGAAGCAGCAAGGAGCCTCAGAAGTTGTTCAAGTTGTTAGACATGTTTGAATCAATGCAGAAACTCAAACCCCAAATCATGGAAATCTTTGATGGTGAAGCTGGAGTGGACATTTGCACAAGGTTTAGAGAGCTTGAAAAGCTCATTGTTGATGCTTCAAGCAAAGTTTTCTGGGAATATGTCGTCAACTACCTCAAGTACCTTGCCACAGCGAATTACAGAGCAACCATGGCTGAAGTTCTCGGAACAGAACAAATATGGAAAACAGGGGTGTTCGCGAAACCTGAGGAAGACGATGAGGGTTTACTAAAGCATGCCATTTCCAATGTCATGGAGGCACTTCAAAGAACCATTGATTCCAAACGCTCTGTTTGCAGGGACAAGATTTTGATCAACATATTCATGATGAACACGTATTGGTACATGTACATGAGAACAAAAAACACAGAGCTTGGTGAGTTGTTGGGTGAGGATTACATGAAAGGTGGTTACAAAGCAGTGGCAGAGGAATCAGCTTACTTGTACCAGAAGCAAGCATGGGGAGTTTTGGTGAGGATTTTGGATGCAGAGGATCTCAGGGAACAGGGGAAGGGAAGCATTGGAAGATTGGTGGAACAGAAGATTGAGACATTTTTCAAGTGTTTGGATGATATTTGTGAGAGGCACAGAGTGATTTATAGCATACCAGATGCTGATTTGAGGGAACAGATGAGGGAAGCAACCATGAAGCTTGTGGTTTCTGCTTATGCAGAGTTCTTGGAGTCTTACTCTGGATTGTTGCAGAGGAAAGTGTATCCGAGTCCTGAGAGGGTGCAAGGGATGTTGAGGAGGGCTTTTGATGGTGGTGATGGGAAATTGAAGAGGAGGAACACTACTCCTAATGATAGGAATGGTGGACATAATTCTATGGAAGGTGATAATAGATGGTCCAGATAA 2004 0.4431 MALQLFSPNPEQQQEDAADTLIKLESACSDMRSLLQSSEKMEQNLETMETRHDLLQGTLSSASRKIAPLQSLAMSRKALDTRIHRAISPALALLQTFKLAESLQNDLLDLSTKLSEENTHQKRLHKLLDYMDCVDRLNEAINAICRDVEPVIQKLQEVVELREALVTLKALYETEVDEMRFEGLLDQALVHMQDEFEALLLKMKHRKLGDMSQEHVGNGTEVVKVACDLGSELEIEVLRRISNILANNDCLDICIDIYVKGRYRRAAKALMKLSPDYLRTYTPEGIDEMEWESLETAITLWIQHLGVAANKVLLSEKKLCERVLGETMEGLVWPECFVKISDKIMAVFFRFGEGVARSSKEPQKLFKLLDMFESMQKLKPQIMEIFDGEAGVDICTRFRELEKLIVDASSKVFWEYVVNYLKYLATANYRATMAEVLGTEQIWKTGVFAKPEEDDEGLLKHAISNVMEALQRTIDSKRSVCRDKILINIFMMNTYWYMYMRTKNTELGELLGEDYMKGGYKAVAEESAYLYQKQAWGVLVRILDAEDLREQGKGSIGRLVEQKIETFFKCLDDICERHRVIYSIPDADLREQMREATMKLVVSAYAEFLESYSGLLQRKVYPSPERVQGMLRRAFDGGDGKLKRRNTTPNDRNGGHNSMEGDNRWSR* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3076 667 Pfam Exo70 exocyst complex subunit 301 415 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lja5g3076 667 Pfam Exo70 exocyst complex subunit 416 631 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lja5g3076 667 MobiDBLite consensus disorder prediction 636 650 - -
Lja5g3076 667 MobiDBLite consensus disorder prediction 651 667 - -
Lja5g3076 667 PANTHER OS08G0519900 PROTEIN 416 637 - -
Lja5g3076 667 PANTHER OS08G0519900 PROTEIN 18 415 - -
Lja5g3076 667 MobiDBLite consensus disorder prediction 636 667 - -
Lja5g3076 667 Gene3D Exocyst complex component Exo70 416 645 - -
Lja5g3076 667 Gene3D Exocyst complex component Exo70 128 415 - -
Lja5g3076 667 PANTHER EXOCYST COMPLEX PROTEIN EXO70 416 637 IPR004140 GO:0000145|GO:0006887
Lja5g3076 667 PANTHER EXOCYST COMPLEX PROTEIN EXO70 18 415 IPR004140 GO:0000145|GO:0006887
Lja5g3076 667 SUPERFAMILY Cullin repeat-like 127 636 IPR016159 -
Lja5g3076 667 Coils Coil 31 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3076 Lja-Chr5 60404351 60407504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3076 24 623 EXO70 exocyst subunit family AT4G31540 26.147 8.69e-57 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3076 5 60404351 60407504 Lja5g3076 5 60404351 60407504 ECH