Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2654 ATGGTGGGTGATGATCACAGAGACCAGTTTCCTATTGGAATGCACGTTCTTGCTGTTGATGATGATCCAACGTGCCTCATGATTTTGGAGGCTATGCTCCGGAAGTGTCAATATAAGGTTACTGCAACTGATAATGCAATAACAGCACTGCAGCAGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCACCGATGTCCATATGCCTGAAATTGATGGATTCAAGTTTCTTGAGCTTGTGGGACTTATAATCGACATACCTGTTATACTGTTGTCTGTAAATGGCGACTCGAATATGGTGATGAAGGGAATTACTCACGGCGCTTGTCATTATATGCTGAAACCTGTTAGAGTTGAGGAGCTAAAGACCATTTGGCAGCATGTAATCAGGAACAGGAAAATTGGCTCGAAGGAAAAGGAAGGGACCAAAACCAGCAGCAACCATGAGACACTTAATTATAGCGACAATGGTCAAGGGTCCGCAGCCACACCAAATTCAGATCAAAATGGAAAGTCATCCAAGAAAAGAAAGTATCAAGATTTCGATGACGTGGAGCATGAGAATGGTACTGATAGTGGGGACTCATCAGCTCCGAAGAAGCCTCGAGTTGTCTGGTCTGGGGAGCTACACCAAAAATTTCTTGCTGCTGTCAATCAGTTAGGCATTGACAAGGCTGTCCCTAAAAAAGTTCTTAAAATGATGGATGTTGAAAACCTTACAAGGGAGAATGTGGCCAGCCATCTGCAGAAATATAGACTTTATCTGAAAAGAATTAGCTCTATGGCGAACCAACAAGCTAATCCGATACTGGGTTCCGTTTCTCGGAAAAATGCTTTCGGATCCAGATTAAACACTCCTGCCACTCATTCTTCAAGAACTCTTCAGGTTGATCAATTTCAACACAGCAAGGGCGTTAGTCATATTCCAAACCAGAACAATACCTTCATGTTGGAAGAAAATCAAAGACCTAGTGAGTTGAGTATCTCAAACAATGACTTAGAAGATAATTCCCAAGACAAACAAACGGGAAGAGTTTCAACTTCATTAGCCCCTCAAGATTCACAATTCTCTCTCCCTCTGCTGGATAATGACAGGTCAAATGATGTTTGCTCAACTGAGTATCTTGCGAATGAATGTTTTGGACCGGCTTCTGTGTCTTGTACAGATAACATGACTCCTGTACCCTGGAACATAAGCTGTAATGCTCCATTTGAAGGGTGGGATAATCATAATCAGAATAGCACTTACCATTCTCATGTTAGTGGTGACTCAATAGGCTCTATGATTCCTGCGAATGGTGATCCAGTAAACTCAGCCTTCAATTTTTGCGATCCCTTGCAAATGAACCATGATGAGATCATTGAATTAACTGAAGAGTGCTCAATTAAACCACATCAGCTACATGTAATGGACCAGCAGAGGTATCAAAACAGTAGCATCTGTAATTGTCTTGGTTCCCCTGAAGACTTGGACAGTGCAATGATGATGAAACTGGTTGAAGAAGAGACAGACATCATGTTAAATCTAGAAGATATGATTGACTTCACTGGTATAATTGACCTCACTCCTTTTCTGGACTCTTCAACTGGAAACTAA 1599 0.4153 MVGDDHRDQFPIGMHVLAVDDDPTCLMILEAMLRKCQYKVTATDNAITALQQLRENKDKFDLVITDVHMPEIDGFKFLELVGLIIDIPVILLSVNGDSNMVMKGITHGACHYMLKPVRVEELKTIWQHVIRNRKIGSKEKEGTKTSSNHETLNYSDNGQGSAATPNSDQNGKSSKKRKYQDFDDVEHENGTDSGDSSAPKKPRVVWSGELHQKFLAAVNQLGIDKAVPKKVLKMMDVENLTRENVASHLQKYRLYLKRISSMANQQANPILGSVSRKNAFGSRLNTPATHSSRTLQVDQFQHSKGVSHIPNQNNTFMLEENQRPSELSISNNDLEDNSQDKQTGRVSTSLAPQDSQFSLPLLDNDRSNDVCSTEYLANECFGPASVSCTDNMTPVPWNISCNAPFEGWDNHNQNSTYHSHVSGDSIGSMIPANGDPVNSAFNFCDPLQMNHDEIIELTEECSIKPHQLHVMDQQRYQNSSICNCLGSPEDLDSAMMMKLVEEETDIMLNLEDMIDFTGIIDLTPFLDSSTGN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2654 532 MobiDBLite consensus disorder prediction 322 363 - -
Lja5g2654 532 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 257 IPR017930 -
Lja5g2654 532 MobiDBLite consensus disorder prediction 147 170 - -
Lja5g2654 532 CDD REC_typeB_ARR-like 16 130 - -
Lja5g2654 532 SMART REC_2 14 126 IPR001789 GO:0000160
Lja5g2654 532 PANTHER TWO-COMPONENT RESPONSE REGULATOR 294 496 IPR045279 GO:0009736
Lja5g2654 532 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 271 IPR045279 GO:0009736
Lja5g2654 532 Gene3D - 14 190 - -
Lja5g2654 532 Gene3D - 198 260 - -
Lja5g2654 532 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 5 271 - -
Lja5g2654 532 SUPERFAMILY CheY-like 13 134 IPR011006 -
Lja5g2654 532 MobiDBLite consensus disorder prediction 137 180 - -
Lja5g2654 532 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 294 496 - -
Lja5g2654 532 Pfam Myb-like DNA-binding domain 203 253 IPR001005 -
Lja5g2654 532 Pfam Response regulator receiver domain 16 125 IPR001789 GO:0000160
Lja5g2654 532 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Lja5g2654 532 SUPERFAMILY Homeodomain-like 199 258 IPR009057 -
Lja5g2654 532 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2654 Lja-Chr5 53005602 53008157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2654 8 267 Response Regulator Gene Family AT2G25180 61.303 2.04e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja5g2654 Response_reg 1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2654 - K14491 lja:Lj5g3v0659720.1 947.192