Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2460 ATGGAAAGAATGTTGAACATTGAAGTTCAACAAGTCAATCATAACGTGTCATCATCCCAACAAAAACCATTGACGTCATCATATGGTGACAATAATAAAGATGGTGAACAATCTGCAGCGGTAGCTATCCAGAATGTGGAAGAAGCTCCTCCTACTTCCGGTGATAACGCCACCCAAGTCCAAGGCCAAAATCATAACGTGTCATCATCCCAGCAAAAACCATTGACCTCATCAAATGGTGACAATAATAAAGATGGTGAACAATCTGCAGCGGTAGCTATCCAGAATGTGGAAGAAGCTCCTCCTACTTCCGGTGATAACGCTATCCAAGTCCAAGGCCCAAATCATAACGTGTCATCATCCCAGCAAAAACCATTGACCTCAACATATGGTGACAATAATAAAGATGGTGAACAATCTGCAGCGGTAGCTATCCAGAATGTGGAAGAAGCTCCTCCTACTTCCGGTGATAACGCCACCCAAGTCCAAGGCCCAAATCAACGGCTCAAAATAAATCATCATACCCGCCATACACAACACCAGATAGAAGTGATGGAAAACTTCTTCAAGGAGTACCATCACCCAAATGAAGAGCAGAGAAGAGAGCTTGGCAATTCGCTCGGGTTAAATTCCACAAAAGTAAAATTTTGGTTCCAAAATAAGCGCAGCCAGATGAAGATGGAACGTCATAATAATACTATTTTGATTGCTGAGAATGAGAAGCTTCGCATTGAGACTCTAAAGTACAAAGAGGCATTGAATAATCCGAAGTGCGCTAGTCATAGAGGCCAACCTTATGTTGGTACAATGTCCTTTGAAAAGCAGCAGTTGATGATCGAGAATGCTAGACTGAAAGAAGATCTTGAAAAGATAGCAAAAATTGCAAAAAATCTTGCCAAGTCGTCCTTCTCTAACCTGCCACCATCGTCGCCGCTTCACACATCAATGCCTTCGCACTCTCTTGATGTTGTTAGCTATATTCCGCAATCAAGCATGGTAGAACAAGTTCATGGTGGTAGCAATGAGCCTCAAATGTCAACTATCAACTCTACTTTTACAGAATCTGAGAAAACTTGCATTGTTAAGCTTGCAGTTGGAGCAATGGAGGAATTTACCAAGATGGCTCATGTTGGAGCGCCTTTATGGATCCCTACATTCCACACTGAGATTCTAAATCAACAAGAATATGTTAGGGTTTTCCCTGCGTTACTTGGTCCGAAACCCTTAGGGTTTAGATCTGAAGCTTCAAGGGAAACTATGATTGTTATCATGAATCCAAGTACCCTCATTGAGATACTTATGAATGTGAATCAATGGTCAGCTATGTTTCACAGTATTGTTTCAAGTGCAACAACAACTGAAATACTATCAATTGGAGTGCCAGGAAACTATGATGGAGCCTTGATAGCGATCTCGGCAAAGTTTCAAGTGTTGTCACATCTTGTGCCAACTCGTGACAACTATTTCTTAAGATATTGTAAGCTTCACCCTGATGGGGCATGGGCGGTGGTTGATATTTCGTTGGACTATATGCGACCTGTTGCTACCTCAAAATGCAGAAGGCGACCCTCTGGTTGTATGATTCAAGAATTGACAAATGGTTTCTCAAAGGTTACATGGATTGAGCATGTAGAAGTTGAAGACAACGTGGTGCATGATCTCTTCATAAATCTAGTAAATTCTGGTTTTGCCTTTGGAGCTAGACGGTGGATAGAAACTTTAGAAAGACAGTGCAAACGTATTGCTTGCACAATAACATCAAACATACCACCAGATAACTATAGTGGTATAACTCCTGAAGGAAGAAAAAGCTTGATGAAATTTGCAGAAAAAATTATGCAAAGCTATTGCAACTATGTTGGTGCTTCCCCACCACCACCATATATTTGGACAGTCCACACAACACCACCAACTGGTGCTAATGATGTGAGAGTCATGACCAGAAACCACACTGACGCATCAGGCGCAATTATCGGTCTCTTTATTAGTGTTGCAACTTCTTTCTCGCTTCCGGTTCCTTCCAAGAGCCTCTTTGATTTTCTTCAAAATGTGACCTCAAGAAACCAGTGGGATATCCAGACCAACGGTTTTGTAGTTCAAGAACTGGCACACATAACGAATGGCCATGCTCCTAGTGACTTCGTCTCTTTACTTAAGGCCAATTGTGCAAATTCCAGCGAAAAAACCAAGATCATAGTTCAAGAGGTTTGCACTGACTCTACAGGATCATACATGGTGTATGCTCCTATTGAAATTGATACCCTGAATTTAGTCTTGAGTGGCTGCAATCCAGATTATGGTACCATACAGCCCTCTGGCTTTGCCATTCTTCCTGATGGGCTTGGGCTGAGTGGTGGGTCTGTAACTGATGTTGCATCTGGAGGGTGTTTATGCACATTTGCATATCACACATTGATTGAAGGAAATATAACAGAGTTTCCTCCTGACATGGTAACCTATTTGTGCAATTTTATGAAGTGCACAATTGAAAGAATCCAAGCTGCAATGATGCGTGTGAGCACCTGA 2526 0.4188 MERMLNIEVQQVNHNVSSSQQKPLTSSYGDNNKDGEQSAAVAIQNVEEAPPTSGDNATQVQGQNHNVSSSQQKPLTSSNGDNNKDGEQSAAVAIQNVEEAPPTSGDNAIQVQGPNHNVSSSQQKPLTSTYGDNNKDGEQSAAVAIQNVEEAPPTSGDNATQVQGPNQRLKINHHTRHTQHQIEVMENFFKEYHHPNEEQRRELGNSLGLNSTKVKFWFQNKRSQMKMERHNNTILIAENEKLRIETLKYKEALNNPKCASHRGQPYVGTMSFEKQQLMIENARLKEDLEKIAKIAKNLAKSSFSNLPPSSPLHTSMPSHSLDVVSYIPQSSMVEQVHGGSNEPQMSTINSTFTESEKTCIVKLAVGAMEEFTKMAHVGAPLWIPTFHTEILNQQEYVRVFPALLGPKPLGFRSEASRETMIVIMNPSTLIEILMNVNQWSAMFHSIVSSATTTEILSIGVPGNYDGALIAISAKFQVLSHLVPTRDNYFLRYCKLHPDGAWAVVDISLDYMRPVATSKCRRRPSGCMIQELTNGFSKVTWIEHVEVEDNVVHDLFINLVNSGFAFGARRWIETLERQCKRIACTITSNIPPDNYSGITPEGRKSLMKFAEKIMQSYCNYVGASPPPPYIWTVHTTPPTGANDVRVMTRNHTDASGAIIGLFISVATSFSLPVPSKSLFDFLQNVTSRNQWDIQTNGFVVQELAHITNGHAPSDFVSLLKANCANSSEKTKIIVQEVCTDSTGSYMVYAPIEIDTLNLVLSGCNPDYGTIQPSGFAILPDGLGLSGGSVTDVASGGCLCTFAYHTLIEGNITEFPPDMVTYLCNFMKCTIERIQAAMMRVST* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2460 841 ProSiteProfiles 'Homeobox' domain profile. 168 228 IPR001356 GO:0003677
Lja5g2460 841 MobiDBLite consensus disorder prediction 10 87 - -
Lja5g2460 841 MobiDBLite consensus disorder prediction 100 136 - -
Lja5g2460 841 SUPERFAMILY Homeodomain-like 159 226 IPR009057 -
Lja5g2460 841 Coils Coil 274 301 - -
Lja5g2460 841 CDD homeodomain 175 226 IPR001356 GO:0003677
Lja5g2460 841 Pfam Homeodomain 174 226 IPR001356 GO:0003677
Lja5g2460 841 CDD START_ArGLABRA2_like 360 578 - -
Lja5g2460 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 150 837 IPR042160 -
Lja5g2460 841 Coils Coil 220 240 - -
Lja5g2460 841 Gene3D - 407 583 IPR023393 -
Lja5g2460 841 SMART START_1 362 580 IPR002913 GO:0008289
Lja5g2460 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 150 837 - -
Lja5g2460 841 Pfam START domain 365 580 IPR002913 GO:0008289
Lja5g2460 841 Gene3D - 157 237 - -
Lja5g2460 841 ProSiteProfiles START domain profile. 353 583 IPR002913 GO:0008289
Lja5g2460 841 MobiDBLite consensus disorder prediction 10 39 - -
Lja5g2460 841 SUPERFAMILY Bet v1-like 355 581 - -
Lja5g2460 841 SMART HOX_1 170 232 IPR001356 GO:0003677
Lja5g2460 841 MobiDBLite consensus disorder prediction 49 87 - -
Lja5g2460 841 SUPERFAMILY Bet v1-like 598 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2460 Lja-Chr5 47989511 47993939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2460 154 836 Homeobox Transcription Factor Family AT4G04890 50.570 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja5g2460 START 8.1e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2460 K09338 - vvi:100264009 685.641