Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2405 ATGGAGAATTCTGGGTGGAAGCCTAGTAATGTGGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAATTCTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTATTTTTGCAAGGGCTGCAGAAGGTACTGGACTAGAGGTGGGTCCCTCCGAAACGTTCCGGTTGGCGGTGGATGCAGGAAGAACAGAAGAGGGAACAAGAACTTCAGACAATCCATTGATGGTCTTACTTTCAGAAATTCACCTACAGATCATCATAACCCAATTGGCCAGTGTTATGAACCTAGGAAAAATGTTAATTCACCTTCTAGCTCTTCAGGTGTGACTGAGGGATCAGACATTGATCTTGCACAAGTTTATGCAAATTTTCTCCATCAGAAGCCAGATTCAGGAGCAGGGATTGAGAATAATATTCCGGATCATCAATTGCAAACAGTTTTTGATCCTTCTCTTGAAAATTCAAGTTCTTTGCCTGAAGAACTTTGTCTTACTGGGTGTTTGAATCTTCCTGAACAACATTCCACAAAGTCCAACGTGGGTGAGGGTGATAATAACCAAATGTACTATAGCGAGTTCAACTCTATGCAAAGGCTTCAAAAAGAGACTATGAGTGATGTTGAGCTTCCACCTTTGCCAGGTGAAGAAGCTGAAGCCTCACATGATGTGATGTGGTCAAATTCTGAAGAGATGATGATGAACCATGATGCATTTCAAATCACACAAGAGCCACCACTTCTTGGACCTCAAGTTCATGATGATGCTGACTTGTTAATGGGTAATTGGTGCCCCTTTGATTTGCCTTGA 819 0.4225 MENSGWKPSNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTRGGSLRNVPVGGGCRKNRRGNKNFRQSIDGLTFRNSPTDHHNPIGQCYEPRKNVNSPSSSSGVTEGSDIDLAQVYANFLHQKPDSGAGIENNIPDHQLQTVFDPSLENSSSLPEELCLTGCLNLPEQHSTKSNVGEGDNNQMYYSEFNSMQRLQKETMSDVELPPLPGEEAEASHDVMWSNSEEMMMNHDAFQITQEPPLLGPQVHDDADLLMGNWCPFDLP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2405 272 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 3 271 - -
Lja5g2405 272 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 271 IPR045174 GO:0003700|GO:0006355
Lja5g2405 272 ProSiteProfiles Zinc finger Dof-type profile. 15 69 IPR003851 GO:0003677|GO:0006355
Lja5g2405 272 Pfam Dof domain, zinc finger 16 69 IPR003851 GO:0003677|GO:0006355
Lja5g2405 272 ProSitePatterns Zinc finger Dof-type signature. 17 53 IPR003851 GO:0003677|GO:0006355
Lja5g2405 272 MobiDBLite consensus disorder prediction 80 115 - -
Lja5g2405 272 MobiDBLite consensus disorder prediction 99 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2405 Lja-Chr5 45818590 45819408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2405 6 271 C2C2-Dof Transcription Factor Family AT3G52440 40.845 1.50e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja5g2405 zf-Dof 6.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2405 - - lja:Lj0g3v0106459.1 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2405 5 45818590 45819408 Lja5g2405 5 45818590 45819408 ECH