Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1863 ATGACTTCCTCTTTCTTTCACAACCCAGATTTGGAAATGCTGAAGATGGAGGCGGAGCATTCAGATATTATATTCGATCATGATTTTCTGTCCTTCCACATCTCTGATTTCTCCACAGATTCACAGCAGGCACCAACAGAAGAAAACAACAATGAGCCAAATCAATCTGCAGTGAAGAAGTCCAAAGCTAAAGAAATGCAGACGAATAAGGAAAAGTCATACATAGGTGTCAGGAAGAGGCCATGGGGAAAATTTGCAGCTGAAATCAGAGATACAACACGGAACGGCGTGAGGGTTTGGCTCGGAACATTTGATAGTGCTGAGGATGCTGCTTTAGCTTATGACCAAGCTGCATTTACCATGAGAGGCGGTAACGCTGTTCTCAATTTTCCGGTCGAAAAGGTGAAAGAATCTTTGCAAGAGATGGAATATGATTGCGGCAAAGGGTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATCATCATCAAAAGGTAAGAAGAACAAAGAGAAACAAGTACCATTGGTGCTAGAGGATTTGGGTGTTGAATATCTAGAACAACTTCTAAGCATATCTGATCAAAGTGAAAGCAGTACCAGCTACTTCAATTAA 627 0.4211 MTSSFFHNPDLEMLKMEAEHSDIIFDHDFLSFHISDFSTDSQQAPTEENNNEPNQSAVKKSKAKEMQTNKEKSYIGVRKRPWGKFAAEIRDTTRNGVRVWLGTFDSAEDAALAYDQAAFTMRGGNAVLNFPVEKVKESLQEMEYDCGKGCSPALALKERHCIQRKSSSKGKKNKEKQVPLVLEDLGVEYLEQLLSISDQSESSTSYFN* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1863 208 MobiDBLite consensus disorder prediction 40 72 - -
Lja5g1863 208 PANTHER DNA-BINDING DOMAIN 20 196 IPR044808 GO:0003700|GO:0009873
Lja5g1863 208 MobiDBLite consensus disorder prediction 40 62 - -
Lja5g1863 208 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Lja5g1863 208 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Lja5g1863 208 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Lja5g1863 208 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Lja5g1863 208 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Lja5g1863 208 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Lja5g1863 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 20 196 - -
Lja5g1863 208 SUPERFAMILY DNA-binding domain 73 133 IPR016177 GO:0003677
Lja5g1863 208 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1863 Lja-Chr5 22338396 22339097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1863 71 200 AP2-EREBP Transcription Factor Family AT3G23240 59.854 1.97e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja5g1863 AP2 8.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1863 K14516 - gmx:100811486 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1863 5 22338396 22339097 Lja5g1863 5 22338396 22339097 ECH