Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1684 ATGGACACTGCTCAGTGGCCACAGGAAATTGTGATGAAGCCAATTGAAGGTATTGTGGTGACAAACACATGTCCAAAGCCTGAATCCATGCTGGAGATCAAGAAGGCAAGGCCACAGAAAGAAGAAGCTGTGAACTGTCCAAGGTGTCACTCAATCAACACCAAGTTCTGCTACTACAACAACTATAGCCTCACTCAGCCCAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACTGAAGGCGGGTCCCTCCGAAACATCCCAGTAGGAGGTGGATCAAGGAAGAACAAGCACAGATCTAATTCTGTTATTTCTACACCTTCAACAACCAGTAATAAGAATCTTCCTGATCTGGTCACACCAACTTGCACTCCAAACCCTAAGATTTTCAATGATGGCCAAGATCTGAATTTGGGGTTCCCAAAAATCTCTGAATTGGTTCATCAAAACAACAACACTTCTTTTTGTTCAACTACTACATCTTCAACTTCTCACCTTTCAGCATTGGGGCTTCTTACTGGGATCACTTCTTCTTCTTCAAGTTCTAGGGGTTTGCAATATTCTTTCATGCCTGTACCAGTTTCAGCTGATCCAAACACTGTTTACACTACTTGTGGGTTTCCTATGCATGATTTTAAGCCAACCCTGAATTTCACTCTAGATGGGAATGGAAGTGATTATGCAAGTTTTCAGGGTCATGTTCAAGATACAAGTACTGGGAGGGTTTTGTTCCCGTTTGAGGATTTGAAACAGGTGTCTAGCACCACAGCAAGAATGGATCACAATAATGATAAGGAGGTGCAACAAGGAGATTCAGCTGGGTATTGGAGTGGAATGTTAGGTGGTGGTGGATCATGGTAA 861 0.4332 MDTAQWPQEIVMKPIEGIVVTNTCPKPESMLEIKKARPQKEEAVNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKHRSNSVISTPSTTSNKNLPDLVTPTCTPNPKIFNDGQDLNLGFPKISELVHQNNNTSFCSTTTSSTSHLSALGLLTGITSSSSSSRGLQYSFMPVPVSADPNTVYTTCGFPMHDFKPTLNFTLDGNGSDYASFQGHVQDTSTGRVLFPFEDLKQVSSTTARMDHNNDKEVQQGDSAGYWSGMLGGGGSW* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1684 286 MobiDBLite consensus disorder prediction 86 118 - -
Lja5g1684 286 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 156 282 - -
Lja5g1684 286 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 107 - -
Lja5g1684 286 MobiDBLite consensus disorder prediction 95 118 - -
Lja5g1684 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 156 282 IPR045174 GO:0003700|GO:0006355
Lja5g1684 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 107 IPR045174 GO:0003700|GO:0006355
Lja5g1684 286 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Lja5g1684 286 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Lja5g1684 286 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1684 Lja-Chr5 18623864 18625885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1684 1 286 C2C2-Dof Transcription Factor Family AT4G24060 43.804 4.03e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja5g1684 zf-Dof 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1684 - - vvi:100266812 298.901