Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0953 ATGATTTTCACAGAGAAAATGCAGTGCATGAAGATGAGGTTCCCTAATTACATCCAAGCATTGGAAGAAGAGCTCCTGAAAATTCAGGTGTTCTCCAAAGAGCTTCCTCTTTCATTGGAGCTGGTCACACAAGCTATTGAAGCTTGTAAGCAGCAGTTGTCTGGAACTACCACTGAGAATGGCCAATCGGAGTGTTCAGAGCAGACAACATCAATGGGAGAACGTGTTTTGGAGGAGTTCATTCCGATCAAGAAAAGGGCATCCACTTATTGTGATGAAGATGAGCTACATTCTCATGAGAAAAATGTTTCAAAGGGTGATAAGAACAACACTGATGAGAGGAAAATGGATTGGCTTAGATCTGTTCAGTTATGGAACCCGGATCCCCCAGCTGGGGAGGATGTGACTAGGAAAGTGCCTGTGATGATGGACTTGATGAGAAGTGGATGTGGTGGTGGTGGTGCTTTCCAGCCATTTCATAAAGAAGAAAGAGCTGAAAAGACAATTGAATCATTGAGTAAAGCACCCTCCTCTTCTTCTCCGGTAGCCACCGCAAGTTCTACCGCAGCGAAGGCCACCACCAGTCACAGTGGTGAAAGCAGGAAAAGAGTGGAGAAAGAGGGGCAGAGAAAGCAGCGCAGGTGCTGGTCACAGGATTTGCACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGTGGTCCAGATACTGCCACACCAAAGCAAATTAGGGAGAAAATGAATGTTGGTGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCACTCTAAAAGACCAAGTCCTGCAGTTCACAACACAGCCAATTCTCAAACAGCACCTTTTGTCCTTGTAGGAAACATTTTTGTTCAACAGCCACAATATGCAGCAGCATCAGGGGAACTGAACAAAGTTATGGCACCTGCCGGAATTTACGCGCCGGTGGCCACACATCCTCCAGCTGTTTCACACACACCAGATGCTTCAATTAAGAAGCCAGAGTTCAAGAAACTAAAGCTATTTGAGCAATCAAACTTAGAAGAAAGAGCTAACAATCACAGTGTAGGAGGAGGTGTTCATTCAAACTCTCCTTCCTCATCATCCTCCACACATACCACTACTACTTCCCCTGGCTGTAGAGTTTGA 1155 0.4554 MIFTEKMQCMKMRFPNYIQALEEELLKIQVFSKELPLSLELVTQAIEACKQQLSGTTTENGQSECSEQTTSMGERVLEEFIPIKKRASTYCDEDELHSHEKNVSKGDKNNTDERKMDWLRSVQLWNPDPPAGEDVTRKVPVMMDLMRSGCGGGGAFQPFHKEERAEKTIESLSKAPSSSSPVATASSTAAKATTSHSGESRKRVEKEGQRKQRRCWSQDLHKRFLHALQQLGGPDTATPKQIREKMNVGGLTNDEVKSHLQKYRLHSKRPSPAVHNTANSQTAPFVLVGNIFVQQPQYAAASGELNKVMAPAGIYAPVATHPPAVSHTPDASIKKPEFKKLKLFEQSNLEERANNHSVGGGVHSNSPSSSSSTHTTTTSPGCRV* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0953 384 MobiDBLite consensus disorder prediction 351 384 - -
Lja5g0953 384 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 378 - -
Lja5g0953 384 MobiDBLite consensus disorder prediction 196 215 - -
Lja5g0953 384 MobiDBLite consensus disorder prediction 171 195 - -
Lja5g0953 384 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Lja5g0953 384 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Lja5g0953 384 Gene3D - 210 268 - -
Lja5g0953 384 MobiDBLite consensus disorder prediction 164 215 - -
Lja5g0953 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Lja5g0953 384 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Lja5g0953 384 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 378 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0953 Lja-Chr5 9343659 9345686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0953 1 335 G2-like Transcription Factor Family AT1G68670 46.154 5.35e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja5g0953 Myb_DNA-binding 1.3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0953 5 9343659 9345686 Lja5g0953 5 9343659 9345686 ECH