Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0952 ATGGAGGTAGGTAGTTGCACCGACGAAACTTCCATAACCAGCGACTCCCTTTCAGCATCCATCACTCCGGCGAAGCTATCTCCACCGCCGCCGAACACACTCTGCCGCGTCGGCAGCGGCGCTAGCACCGTGATCGACGCCGAATGTTGCGGCGGCGGCCCCGGGGAGGCTGAGTCCCGGAAGCTTCCGCCGTCGAAATACAAAGGCGTGGTGCCGCAACCCAACGGCCGGTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAAGACGAGGCCGCCAGAGCCTACGACATCGCCGCTCAGAGATTCCGCGGCAAGGACGCTGTAACTAACTTCAAGCCTGTTGCCGGCGCCGGAGATAGCGCTGATGATGAAGCAGAGGCGGAGTTTTTGAACTCGCATTCCAAATCCGAGATCGTGGATATGCTCAGGAAGCACACCTACCATGACGAGCTTCAGCAGAGCAAGCGCGGCGGGGCGTGCGGCGGAATGAAACGGCGGCGGATCGGTGAGGGTGCAGGGAATGAGTTGTTTCCCGGCGCGTGTGATGAGAGGGCGCGTGAGATTTTGTTTGAGAAAACGGTTACGCCGAGTGACGTGGGGAAGTTGAACCGGTTGGTTATACCGAAGCAGCACGCGGAGAGGCACTTCCCGTTGGGCGCGGTGGCCGTCACCGATGACGCGACCGCGGCGGCGAAGGGAATGCTTTTGAATTTTGAAGACGTTGGAGGGAAAGTTTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAGAGCTATGTTCTGACCAAAGGATGGAGTCGGTTTGTGAAGGAGAAGAATCTTAGAGCCGGCGATGCGGTCCGGTTCCACCGGTCAACTGGACCGGATCGCCAGCTCTACATAGATTGCAAGGCCAGTAGTAGTAGTGGTGGTGGTGTTGGTGAGGTTGTTGATGTAAGCATTAAAACCGGTGGTTTGTTTATTCCGGTTGGACCAGTGGTTGAGCCGGTACAGATGGTTCGGCTTTTTGGGGTCAACCTCTTGAAACTACCTGGTTCTGATGGTGGTTGCAATGGGAAGAGGAAAGAGATGGATCTGTTTTCTTTAGAATGTAGCAAAAAGCCAAAGATGATGGTTGGAGCTTTGTAA 1155 0.5602 MEVGSCTDETSITSDSLSASITPAKLSPPPPNTLCRVGSGASTVIDAECCGGGPGEAESRKLPPSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVAGAGDSADDEAEAEFLNSHSKSEIVDMLRKHTYHDELQQSKRGGACGGMKRRRIGEGAGNELFPGACDERAREILFEKTVTPSDVGKLNRLVIPKQHAERHFPLGAVAVTDDATAAAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFHRSTGPDRQLYIDCKASSSSGGGVGEVVDVSIKTGGLFIPVGPVVEPVQMVRLFGVNLLKLPGSDGGCNGKRKEMDLFSLECSKKPKMMVGAL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0952 384 SMART rav1_2 66 127 IPR001471 GO:0003700|GO:0006355
Lja5g0952 384 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Lja5g0952 384 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Lja5g0952 384 SMART B3_2 199 308 IPR003340 GO:0003677
Lja5g0952 384 Pfam B3 DNA binding domain 199 301 IPR003340 GO:0003677
Lja5g0952 384 SUPERFAMILY DNA-binding pseudobarrel domain 197 305 IPR015300 -
Lja5g0952 384 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g0952 384 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Lja5g0952 384 SUPERFAMILY DNA-binding domain 65 121 IPR016177 GO:0003677
Lja5g0952 384 Gene3D - 189 314 IPR015300 -
Lja5g0952 384 ProSiteProfiles AP2/ERF domain profile. 66 121 IPR001471 GO:0003700|GO:0006355
Lja5g0952 384 ProSiteProfiles B3 DNA-binding domain profile. 199 309 IPR003340 GO:0003677
Lja5g0952 384 MobiDBLite consensus disorder prediction 1 32 - -
Lja5g0952 384 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 384 - -
Lja5g0952 384 CDD B3_DNA 198 294 IPR003340 GO:0003677
Lja5g0952 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 384 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0952 Lja-Chr5 9309332 9311004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0952 5 380 B3 DNA Binding Superfamily AT1G25560 57.215 1.38e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lja5g0952 B3 3.4e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0952 5 9309332 9311004 Lja5g0952 5 9309332 9311004 ECH