Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0949 ATGCTGGTTCAGAGAAGGGTCATGAGTTGGAGAAGGGTCGCCAAAGCCTTCCAAGCTCTGCTAGCTCATGCCTTGCTCTTCTGCTTCACTCTTCTTCTTGCTCTCAAGCTTGATGGGACCTTGCTTTCTTCATGGTGGACTGTATTTTTTCCTCTATGGCTTTTTCATGCTGTGGTGGCTCGAGGCCGATTTTCATTGCCTGCTCCTTCAATGCCTCATGGTCGCCAATGGGCTCCTTGTCATTCAATCATAGCAGCACCTGTACTTGTTGCATTTGAGCTACTTCTTTGTATACATCTCAGCAGCAGTTATGACGTGAATTTAAAGATTGTATTCATACCTCTGATAGCTTTTGAAGTGGTGATTTTGATTGATAACGTCAGGATGTGTAGGGCTTTGATGCCTGGAGATGATGAAAATTTGACCGACGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCAATATCCATGGTCTTCTTTATTGCTGCCACAGTGTTCACCCTCCTAAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCACAGTGCTTTGCGTTTCTTGTTTGTACGAAGTGGCACAATCCAACAATTCATGGAAGCTGTCAGATTACCGAACCATGTTCGTCGTCGAATTCCATAAGATACCTGGACTGGAGTAGAGGAGGCATAGTTGTTTCTACAGATGAAGATAGGCAGCAAAATAGGTTATGCAATCTGCAGGACATTGGCGGGCATATTATGAAAATTCCATTTGTTGGTTTCCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCCAATGCAAAGGATATACCCAATTGGGTCATTTTTTTCCCTCTTATTTTATTGCAAGGAGCTGGGGTTTTATTTGCAGTATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACACTGGAGATATTCCTAGAAGCTACTCATCTATAGCATCTAAATCTTGTGACTGCTTCGGGTTCTTTCGTCGTGGGTCAAGGTTGCTAGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTATTGTGCTGGGAATTCTGGGTATAATACTTTCTCTCCTGATACGGTGAAGAAAATGCCTAGAGCAGATCTTGTTGAGGAGATTTGGAGACTTCAAGCTGCATTGGGTGAGCAGACAAAAGTTACAATATCTAGCCAGGAGGAGTATGAAAAACTTCAAAACGAGAAGATCTTATGTAGAATTTGCTTCGAAGAGCAAATTAATGTGGTCCTACTTCCCTGCAAGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAGGTGCCCGATCTGCCGTAGCACCATTGAAGAAAAGATGCCAGTGTATGATGTGTAG 1404 0.4224 MLVQRRVMSWRRVAKAFQALLAHALLFCFTLLLALKLDGTLLSSWWTVFFPLWLFHAVVARGRFSLPAPSMPHGRQWAPCHSIIAAPVLVAFELLLCIHLSSSYDVNLKIVFIPLIAFEVVILIDNVRMCRALMPGDDENLTDEAVWETLPHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGSCQITEPCSSSNSIRYLDWSRGGIVVSTDEDRQQNRLCNLQDIGGHIMKIPFVGFQILLFMHLEGTPSNAKDIPNWVIFFPLILLQGAGVLFAVYRLIEKIVLLLYTGDIPRSYSSIASKSCDCFGFFRRGSRLLGWWSIDEGSREEEARLYCAGNSGYNTFSPDTVKKMPRADLVEEIWRLQAALGEQTKVTISSQEEYEKLQNEKILCRICFEEQINVVLLPCKHHILCSTCCEKCKRCPICRSTIEEKMPVYDV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0949 467 SUPERFAMILY RING/U-box 410 463 - -
Lja5g0949 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Lja5g0949 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Lja5g0949 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Lja5g0949 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Lja5g0949 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Lja5g0949 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0949 Lja-Chr5 9245811 9253005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0949 12 467 C3H Transcription Factor Family AT1G73950 62.284 0.0 583
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0949 5 9245811 9253005 Lja5g0949 5 9245811 9253005 ECH