Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0948 ATGATACAGGAAGATCAAGGACAGTGTTCTTCTCATCAAGTCATCAACAACTTCCAAACCTATCAAGAACATCAGCTTCTCCTTCAGCAACAGATCATGTCTCAGCAAAACAGTGACATCTTTGGATTCAATCATCATCACATGTTCCCTGGTGGTGAAGTTCCATGGTCTATGCCTCAAGTTCAACCCTTCAACCAAGCTTCACCTTATGCAAGTTTTTTCAACAGATCAAGGGTTGTTCCTTCTTCTCTTCAGTTTACATATAATGATCATCATCATCATCAGGTTCAACCTGGTTCATCATCATCAGCACCTTTTGGCCTTCAAGCTGAGATGGGAAAGATGAGTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAATCATCTTGCCAAGCTTCGTAGTTTGTTGCCCAGCACAACAAAAACAGACAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACTTCACTAATAGCAGAAACGAGTCCAGTTCCTACAGAAGCTGATGAGATAACAGTGGATGCAGCTGATGATGAAGACAATGGCAAGTTCGTGATCAAAGCCTCGCTTTGCTGCGAAGACAGGACAGATATTTTGCCTGAACTCATAAAGACCTTGAAAGCGTTGAGGTTAAGAACCCTAAAAGCTGACATCACAACGCTCGGCGGGCGCATGAAGAACGTGTTGTTCATCACTGGTGATGATAATAATGAGGATAGTTATTCAAGTAGAAGCTGCATAATTAGCTCAATACAAGAAGCGCTTAAAGCAGTGATTGAGAAGAGCGTTGGAGATGAATCTGCTGCTTCTGGAAATGTTAAGAGACAAAGGACCAATATAGTATGA 921 0.4256 MIQEDQGQCSSHQVINNFQTYQEHQLLLQQQIMSQQNSDIFGFNHHHMFPGGEVPWSMPQVQPFNQASPYASFFNRSRVVPSSLQFTYNDHHHHQVQPGSSSSAPFGLQAEMGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADEITVDAADDEDNGKFVIKASLCCEDRTDILPELIKTLKALRLRTLKADITTLGGRMKNVLFITGDDNNEDSYSSRSCIISSIQEALKAVIEKSVGDESAASGNVKRQRTNIV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0948 306 PANTHER TRANSCRIPTION FACTOR BHLH30 54 304 IPR045847 GO:0003700|GO:0006355
Lja5g0948 306 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983
Lja5g0948 306 Gene3D - 122 183 IPR036638 GO:0046983
Lja5g0948 306 CDD ACT_UUR-ACR-like 214 287 - -
Lja5g0948 306 CDD bHLH_AtAIG1_like 122 200 - -
Lja5g0948 306 PANTHER TRANSCRIPTION FACTOR BHLH30 54 304 - -
Lja5g0948 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 183 IPR036638 GO:0046983
Lja5g0948 306 SMART finulus 133 182 IPR011598 GO:0046983
Lja5g0948 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0948 Lja-Chr5 9216663 9219575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0948 70 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 64.706 4.36e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g0948 HLH 1.4e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0948 5 9216663 9219575 Lja5g0948 5 9216663 9219575 ECH