Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0943 ATGGCTTCAGGCAGTGGTGCTTCTCAGACGAGTTCAGCAGCTGATTCCTACATTGGGTGCTTGATCAGTTTGACCTCAAAAAGTGAGATCAGATACGAGGGTGTTCTCTACAACGTCAACACCCAAGAATCTAGTATTGGTCTCAGAAATGTGCGATCTTTTGGAACTGAAGGAAGGAAAAAGGATGGTCCACAAATTCCTCCAGGCGACAAGGTGTACGAGTATATACTGTTCCGTGGGACTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCCACTGCACCAATAAATGCTGACCCAGCTATTATTCAGTCTCAGTATCTTCGACCTGTCACCACATCTACAAGTTTACCAGCTGCAAGTGGATCTTTGACGGATCTTAGTAGTTCTCATGCCACACAGCTTGGACATCCTGGGTCAAATTTTCAAGGCCCCTTGCCATTGTATCAACCTGGAGGGAACATGGGGTCATGGGGAGCTTCTTCACCCGCCCCAAATCCAAATGGTGGTGGGCTTGCTGTGCCAATGTATTTGCAAGGATATTACGGTGCCCCGAATGGGCTTCCTCAGTTACACCAGCAATCTTTGCTTCGGCCACCACCTGGATTATCAATGCAGCAGCCAATGCAGTTCCCCAATTATAGTCCCTCTTTCCCAACTGGGCCTTCAAATTTGCCAGAATTCCCATCAGGTGTCCTCCCTGTGGGTACCAGTTCTCCTAGTGTAACATCAAATTCTATGCTTTCGTCAAATCTTCCATCAACTCTACCCCCAGCACCTTCTGCTACTCTAGCTCATGAAACCCCACAAGTATCAGTTTCAAATAAGGCACCGAATGCATCATTTCCAGCAGCCAAACTGGTTGCTAACTCACCATCTCTGACTCCTTACACCAATGGTGGTCCAGATACAAGTGCTTTAGTGCATCCTTTCAATAAACCTAATGTAGTTTCAGGTTCTAGCTTACCGTACCAAACTGTATCCCAGCTGACCCCTGCTATCGTTGGATCATCAAGTTCCATTCGAACTGAACCACCGGTACCATCTCTGGTAACCCCAGGTCAGTTACTGCAGTCTGGACCAACTGTAGTATCTTCTTCTCAGCCTTCACAATCACTTCAGAAGGATGTTGAAGTGGTTAAGGTGTCATCAACATCACTTCCAGAGCCATCTGTGCCAGTTTCTGCTGAATCTCAGCCACCAATACTACCATTGCCAGTAACATCACGGCCCAGTTATAGGCCTGGGGGAGCTTCTATCCAAACTCATCATGGCTATGGATACAGAGGACGTGGAAGAGGAAGAGGAGCCGGGGGTTCCCGCCCAGTTGAAAGATTCACTGAAGACTTTGACTTCATGGCAATGAATGAGAAATTCAAAAAAGATGAAGTATGGGGTCATCTAGGTAAAAGCAACAAGTCTCGTTCAAAAGAGACAGATGGGGAAGAAAATGCCAGTGATGTAGATGACAATCAAGATGATGACAATGTGGATGTGCCTAAAGTGGAGGTTAAGCCTGTTTATAACAAGGATGATTTCTTTGACTCACTCTCTAGCAATGCGCTTGATAATGATTCTCAACATGGAAGGATTAGATATTCTGAACAAATTAAGATCGATACTGAGACATTTGGTGACTTTCCGAGGCACCGTGGTGGCTGGGGCGGCCGTGGTCCATGGCGCGGTGGTGGTGGTCGTTCTAGAGGTGGTTACTATGGAAGGGGGTACGGCTATACAGGAAGAGGAAGGGGGCGTGGCATGTCCAGCCGCCCCTAG 1788 0.4726 MASGSGASQTSSAADSYIGCLISLTSKSEIRYEGVLYNVNTQESSIGLRNVRSFGTEGRKKDGPQIPPGDKVYEYILFRGTDIKDLQVKSSPPVQPTAPINADPAIIQSQYLRPVTTSTSLPAASGSLTDLSSSHATQLGHPGSNFQGPLPLYQPGGNMGSWGASSPAPNPNGGGLAVPMYLQGYYGAPNGLPQLHQQSLLRPPPGLSMQQPMQFPNYSPSFPTGPSNLPEFPSGVLPVGTSSPSVTSNSMLSSNLPSTLPPAPSATLAHETPQVSVSNKAPNASFPAAKLVANSPSLTPYTNGGPDTSALVHPFNKPNVVSGSSLPYQTVSQLTPAIVGSSSSIRTEPPVPSLVTPGQLLQSGPTVVSSSQPSQSLQKDVEVVKVSSTSLPEPSVPVSAESQPPILPLPVTSRPSYRPGGASIQTHHGYGYRGRGRGRGAGGSRPVERFTEDFDFMAMNEKFKKDEVWGHLGKSNKSRSKETDGEENASDVDDNQDDDNVDVPKVEVKPVYNKDDFFDSLSSNALDNDSQHGRIRYSEQIKIDTETFGDFPRHRGGWGGRGPWRGGGGRSRGGYYGRGYGYTGRGRGRGMSSRP* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0943 595 MobiDBLite consensus disorder prediction 473 508 - -
Lja5g0943 595 Pfam FDF domain 449 549 IPR019050 -
Lja5g0943 595 Gene3D - 7 93 - -
Lja5g0943 595 SMART FDF_2 448 552 IPR019050 -
Lja5g0943 595 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 6 590 - -
Lja5g0943 595 MobiDBLite consensus disorder prediction 389 446 - -
Lja5g0943 595 SUPERFAMILY Sm-like ribonucleoproteins 16 93 IPR010920 -
Lja5g0943 595 MobiDBLite consensus disorder prediction 398 412 - -
Lja5g0943 595 MobiDBLite consensus disorder prediction 126 144 - -
Lja5g0943 595 Pfam Scd6-like Sm domain 17 90 IPR025609 -
Lja5g0943 595 SMART LSM14_2 11 111 IPR025609 -
Lja5g0943 595 PANTHER SCD6 PROTEIN-RELATED 6 590 - -
Lja5g0943 595 MobiDBLite consensus disorder prediction 546 595 - -
Lja5g0943 595 MobiDBLite consensus disorder prediction 342 377 - -
Lja5g0943 595 MobiDBLite consensus disorder prediction 126 152 - -
Lja5g0943 595 MobiDBLite consensus disorder prediction 245 262 - -
Lja5g0943 595 CDD LSm14_N 14 88 IPR025609 -
Lja5g0943 595 ProSiteProfiles DFDF domain profile. 442 478 IPR025762 -
Lja5g0943 595 ProSiteProfiles FFD box profile. 510 525 IPR025761 -
Lja5g0943 595 MobiDBLite consensus disorder prediction 245 281 - -
Lja5g0943 595 ProSiteProfiles TFG box profile. 532 552 IPR025768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0943 Lja-Chr5 9166094 9173177 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0943 5 9166094 9173177 Lja5g0943 5 9166094 9173177 ECH