Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0939 ATGACAGACACCACAGATGATATTGCTGAAGAAATCTCCTTCCAGAGCTTCGATGATGACTGCAAGCTGCTGGGAAATCTCCTCAACGACATTCTCCACCGTGAAGTTGGCACCACCTTCGTTGACAAGCTCGAACGGATTCGAGTCCTTGCTCAGAGTGCTTGTAATATGAGGCAGGCAGGTATTGTGAACATGGCTGAGCTGCTTGAGAAGCAGTTGGCTTCAGAGTTATCACAGATGACACTAGAAGAAGCTCTCACCCTTGCTCGTGCCTTCAGCCATTATCTTACTTTGATGGGTATAGCTGAAACCCATCATAGGGTTCGGAAAGGAGGGAATATGGCACAAATTTCAAAGTCTTGCGATGATGTGTTCAACCAGCTGGTTCAGGGTGGCGTTTCGCCAGATGAGCTTTATAATACAGTCTGCAAACAGGAGGTTGAAATTGTTCTTACAGCTCATCCCACACAAATTAATCGTCGTACCTTACAATTCAAACACATAAGAATTGCTCATCTTTTGGATTACAACGATCGACCTGATCTTAGCCCTGAAGATCGAGAAATGGTGATTGAAGACCTGGTCAGAGAGATAACCTCAATATGGCAGACAGATGAGCTTAGGCGCCAAAAACCCACTCCTGTTGATGAAGCTAGATCCGGTTTGAATATTGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTCAGCAATGCTTTAAAGAAGCATACTGGTAGGCCACTTCCATTGACTTGCACTCCCATCAAGTTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAACGTGACAGCAAAGGTCACAAAAGATGTTTCACTTCTATCTAGATGGATGGCTGTTGACCTCTATATTCGGGAAGTGGATAGCCTCCGATTTGAGCTATCCATGAACCGGTGCAGTGATAGGTTATTAAGACTGGCACATGAAATTCTAGAAGAAGCTAACCATGAGAATCGCCGTGAAAATTGGAATCAGTCCGTGAAGAGAAGTCTGTCACTTCCAACACAACTTCCAGCTAGAGCTCATTTACCCTCTTTTGCTGAAAATGGTGAATCTCAACATCCTAGACTAGACATTCCTGGACCTGATCACATGCAACTCAATGACAAGGATGGTGGGGTTTCTTCAAGTTCAACTACATTCAAAAGTGGCAATCCCAATATTCGATTATCACTAACAGGCTCAGCAAATTCTAGTGCTTCTTCAGCTGCAGTTTCATCCCCTCCTTCTCTCAACTCTAGTCAATTACTTGCTCAGAGGAAGGTCCAGTTTGCAGAGTCCCAGACAGGAAGGTCCAGTTTTCAGAAGCTCTTGGAGCCACAACTCCCTCAACTTCCTGGTATTGCTCCTTATAGAGTTGTCCTGGGGAACGTAAAAGCAAAGCTTGAGAGAAGTCGCAGACGGTTAGAACTTCTTCTCGAGGATGTTCTGTGTGATTATGATCCTTTGGATTACTATGAGACATCTGATCAGCTTCTGGAACCTCTGCTCATCTGTTATGAATCTTTGCAATCATGTGGATCCGGGGTGCTAGCTGATGGTCGACTTGCTGATCTGATACGTAGAGTTGCTACCTTCGGAATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCTGGGAGACATTCAGAAACACTTGATGCAATTACAAGCTATTTGGATATGGGTACTTACAGTGAATGGGATGAAGAAAAGAAACTAGACTTCTTAACAAGAGAGCTGAAAGGGAAGAGGCCACTAGTGCCTGTTAGTATAGAGGTTCCAGCTGATGTTAAAGAAGTCTTGGATACATTCCGAATTGCTGCTGAGCTAGGGAGTGATTCACTTGGAGCCTACGTGATCTCTATGGCATCAAATGCAAGTGATGTCCTTGCAGTAGAGCTTTTACAGAAAGACGCACTACTTGCTGCTATTGGGGAGTCGGGAAGAGCATGTCCTGGTGGGACGTTGCGGGTGGTCCCTCTATTTGAAACCGTGAAGGACTTGAGAGAAGCTGGTTCAGTTATCCGAAAACTACTATCAATAGACTGGTACCATGAACACATCATTAAGAACCATAATGGGCATCAAGAGGTTATGGTTGGATATTCCGATTCTGGTAAAGATGCTGGCCGCTTCACTGCTGCTTGGGAGCTTTACAAAGCTCAGGAGGATGTTGTAGCTGCTTGCAATGATTATGGTATAAAGGTTACACTGTTCCACGGCCGTGGAGGCAGTATTGGTCGAGGTGGTGGCCCAACTTATCTGGCTATTCAGTCCCAACCACCTGGGTCTGTGATGGGAACTCTTCGGTCTACTGAGCAGGGAGAGATGGTAGAGGCCAAGTTCGGGCTGCCACAGATTTCTGTTAGACAACTTGAAATATACACCACAGCAGTGCTACTTGCAACCCTCCGTCCACCTATCCCACCTCGAGAAATAAAATGGCGTAATCTCATGGAAGAGATCTCAAAGATCAGTTGCGAATGTTATCGCAATGTTGTCTATGAAAATCCAGAATTCCTTTCCTACTTCCACGAAGCCACACCCGAAGCAGAACTCGGCTTCCTTAACATTGGTAGCCGCCCTGCAAGAAGGAAGAGCTCAACCGGGATTGGGAACCTTCGCGCTATCCCTTGGCTATTTGCATGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTTGGAGTCGGAGCAGGTTTGAAAGGTGCTTGTGAGAAAGGCCACACTGAAGAGCTGAAAGCCATGTACAAAGAATGGCCTTTCTTTCAAAGTACAATGGACCTTATTGAGATGGTTTTGGGGAAAGCTGACATTCCTATAGCTAAGCATTATGATGAAGTTCTTGTGTCAGAGAAGAGGCAAGAGCTTGGCCATGAGCTGAGAAGTGAGCTCATGACAGCTGAGAAGTTTGTTCTGGTGATTAGTGGGCATGAGAAACTTCAGCAGAATAATAGGAGCTTGAGGAGGCTAATTGAGAATAGACTTCCCTTCCTCAATCCTATGAACATGTTGCAGGTGGAGATTCTCAAGAGGTTGAGACGGGACGATGACAACCTTAAAATCAGAGATGCTTTGCTTATCACCATAAATGGGATTGCTGCAGGGATGAAGAATACAGGTTGA 3141 0.4537 MTDTTDDIAEEISFQSFDDDCKLLGNLLNDILHREVGTTFVDKLERIRVLAQSACNMRQAGIVNMAELLEKQLASELSQMTLEEALTLARAFSHYLTLMGIAETHHRVRKGGNMAQISKSCDDVFNQLVQGGVSPDELYNTVCKQEVEIVLTAHPTQINRRTLQFKHIRIAHLLDYNDRPDLSPEDREMVIEDLVREITSIWQTDELRRQKPTPVDEARSGLNIVEQSLWKAVPHYLRRVSNALKKHTGRPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAVDLYIREVDSLRFELSMNRCSDRLLRLAHEILEEANHENRRENWNQSVKRSLSLPTQLPARAHLPSFAENGESQHPRLDIPGPDHMQLNDKDGGVSSSSTTFKSGNPNIRLSLTGSANSSASSAAVSSPPSLNSSQLLAQRKVQFAESQTGRSSFQKLLEPQLPQLPGIAPYRVVLGNVKAKLERSRRRLELLLEDVLCDYDPLDYYETSDQLLEPLLICYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHSETLDAITSYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVSIEVPADVKEVLDTFRIAAELGSDSLGAYVISMASNASDVLAVELLQKDALLAAIGESGRACPGGTLRVVPLFETVKDLREAGSVIRKLLSIDWYHEHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNDYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVEAKFGLPQISVRQLEIYTTAVLLATLRPPIPPREIKWRNLMEEISKISCECYRNVVYENPEFLSYFHEATPEAELGFLNIGSRPARRKSSTGIGNLRAIPWLFAWTQTRFVLPAWLGVGAGLKGACEKGHTEELKAMYKEWPFFQSTMDLIEMVLGKADIPIAKHYDEVLVSEKRQELGHELRSELMTAEKFVLVISGHEKLQQNNRSLRRLIENRLPFLNPMNMLQVEILKRLRRDDDNLKIRDALLITINGIAAGMKNTG* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0939 1046 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1046 IPR022805 GO:0006099|GO:0008964|GO:0015977
Lja5g0939 1046 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 19 1046 IPR015813 GO:0003824
Lja5g0939 1046 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lja5g0939 1046 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lja5g0939 1046 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lja5g0939 1046 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 8 1046 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lja5g0939 1046 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Lja5g0939 1046 MobiDBLite consensus disorder prediction 358 423 - -
Lja5g0939 1046 Coils Coil 467 491 - -
Lja5g0939 1046 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 8 1046 - -
Lja5g0939 1046 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 704 716 IPR033129 -
Lja5g0939 1046 Gene3D Phosphoenolpyruvate/pyruvate domain 412 540 - -
Lja5g0939 1046 Gene3D Phosphoenolpyruvate/pyruvate domain 289 368 - -
Lja5g0939 1046 MobiDBLite consensus disorder prediction 382 423 - -
Lja5g0939 1046 Pfam Phosphoenolpyruvate carboxylase 19 333 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lja5g0939 1046 Pfam Phosphoenolpyruvate carboxylase 449 1046 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0939 Lja-Chr5 9112083 9121077 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0939 5 9112083 9121077 Lja5g0939 5 9112083 9121077 ECH