Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0938 ATGATGCCCCCTGAGCAAGAAACCAATATTGCACCCAACAATATCCAAGCCATCACAAACCGACCTGAGAACAACGAATCACCAGAGGGTTCTTCTTCAACTAACAAGGTAAAACCCAGCTCCGATGACAATGGTAGTTCTCCAAAGTTTCAACCTCATGATCCAATAACAACCCCAACAACATCATCATTTTCCATTCTTCATCAATCCTTGCGTCCTGTCACTCTCAAGTTTGAAGACGTTTCATACAGCATAACCTTGCAAAGTCAAAAGAATAAAGGATGTGTTCTTCCAAAAGAGGCAAAAGTAACCAGAAGACTCCTCAGCGGCGTGACGGGGATAGCGAAACCCGGCGAACTGACGGCAATGTTGGGCCCCTCAGGGAGCGGCAAGACCACCCTCCTCACCGCCCTCGCCGGAAGACTCACTGGAAAAGTCTCTGGCACCATAACCTACAATGGAAACCCGGACCCCACCTGCATGAAGCGCAGGATCGGGTTCGTATCGCAAGACGACATCGTCTACCCTCATCTCACCGTGCTTGAGACGCTCACCTACACCGCCCTACTGAGGCTACCAAATAGCCTCACTAGGGAGGAGAAGGCAGAGCATGCAGAGAGGGTGATTACGGAGCTTGGATTAACACGATGCCGGAACAGCCCCATCGGCGGGTGCATGGGGGTTTTCCGGGGAATCTCCGGCGGGGAGAGGAAAAGGGTGAGCATTGGGCAGGAGATGTTGGTGAACCCGAGTTTGCTGTTGCTGGATGAACCGACGTCCGGTCTGGACTCGACAACGGCTCAGCTTATCGTTTCGGTTCTCCGAAGGCTCGCCCGAGCTGGTCGAACCGTGCTTACCACCATTCACCAACCGTCGAGTCGGTTGTACCGGATGTTTGATAAGGTTGTGGTGCTTTCTGACGGGTGCCCCATTTATAGTGGTAATGCAGGTCGGGTCATGGATTATCTTGAGTCGGTTGGTTATATGCCCGCTTTCAACTTTGTCAACCCGGCTGATTTTCTTCTTGACCTTGCTAACGGCATAGTTGCTGATGTCAAACATGATGATCAGATAGAGCACCATGAGGATCAAGCTTCAGTCAAACAGTCCCTAATTTCATCCTATAAGAAGAACTTATATCCTCTTCTTAAAGAAGAGATTCATCAAAACAACAGTGAGCAAGTAGCTTTCACATCAGGAACAGCTAGACGTTCTGATAACCAATGGGCCACTAGCTGGTGGGAGCAGTTTAAGGTGCTTCTTAAAAGGGGTTTACAGGAAAGAAGGCATGAATCTTTCTCTGGCTTAAGGATTTTCCAAGTCTTGTCTGTGTCCATTCTCTCAGGACTTCTATGGTGGCACTCTGATCCCTCACACATACAAGATCAGGTAGGACTACTTTTCTTCTTCTCCATATTCTGGGGATTCTTCCCTCTCTTCAATGCAATCTTTGCATTCCCTCTCGAGAGGCCAATGCTAATAAAAGAAAGATCATCAGGAATGTACCATCTCTCCTCCTACTATGTTGCTAGGATGGTGGGAGACTTACCAATGGAGCTTGTTCTTCCCACTATGTTTGTAACCATCACCTACTGGATGGGTGGTCTCAAACCTTCACTAGTCACATTTGTGTTAACCCTCTTGATCATGCTTTTCAATGTTCTGGTCTCTCAAGGAATAGGCCTTGCATTGGGGGCAATTCTCATGGATGTGAAGCAGGCCACAACACTAGCTTCAGTGACCATGCTCGTTTTTCTGTTGGCTGGTGGTTACTACATTCAGCAAATGCCTTCTTTTATAGCTTGGTTGAAGTACATTTCTTTCAGCCATTACTGCTATAACCTGCTGGTAGGTGTTCAGTATTCAGTGAATGAGGTGTATGAGTGTGGGAAAGGATTGCATTGTAAGGTGAGAGATTTTCCAGCTATAAGGTGTTTGGAACTTGATGACTTGTGGGGAGATGTGGCTGCATTGGCTGTGATGTTTGTTGGATACAGAGTTGTGGCATATCTAGCTTTGAGGATGGGGCAGCCTCACTGA 2040 0.4775 MMPPEQETNIAPNNIQAITNRPENNESPEGSSSTNKVKPSSDDNGSSPKFQPHDPITTPTTSSFSILHQSLRPVTLKFEDVSYSITLQSQKNKGCVLPKEAKVTRRLLSGVTGIAKPGELTAMLGPSGSGKTTLLTALAGRLTGKVSGTITYNGNPDPTCMKRRIGFVSQDDIVYPHLTVLETLTYTALLRLPNSLTREEKAEHAERVITELGLTRCRNSPIGGCMGVFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQLIVSVLRRLARAGRTVLTTIHQPSSRLYRMFDKVVVLSDGCPIYSGNAGRVMDYLESVGYMPAFNFVNPADFLLDLANGIVADVKHDDQIEHHEDQASVKQSLISSYKKNLYPLLKEEIHQNNSEQVAFTSGTARRSDNQWATSWWEQFKVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYHLSSYYVARMVGDLPMELVLPTMFVTITYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPSFIAWLKYISFSHYCYNLLVGVQYSVNEVYECGKGLHCKVRDFPAIRCLELDDLWGDVAALAVMFVGYRVVAYLALRMGQPH* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0938 679 SMART AAA_5 117 309 IPR003593 -
Lja5g0938 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 44 676 - -
Lja5g0938 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 326 IPR027417 -
Lja5g0938 679 MobiDBLite consensus disorder prediction 7 64 - -
Lja5g0938 679 Pfam ABC-2 type transporter 415 621 IPR013525 GO:0016020|GO:0140359
Lja5g0938 679 Gene3D - 68 329 IPR027417 -
Lja5g0938 679 MobiDBLite consensus disorder prediction 1 64 - -
Lja5g0938 679 Pfam ABC transporter 110 260 IPR003439 GO:0005524
Lja5g0938 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 44 676 - -
Lja5g0938 679 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524
Lja5g0938 679 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 332 IPR003439 GO:0005524
Lja5g0938 679 CDD ABCG_EPDR 73 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0938 Lja-Chr5 9089457 9095311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0938 118 308 Calmodulin-binding Proteins AT2G36910 32.338 9.09e-15 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0938 5 9089457 9095311 Lja5g0938 5 9089457 9095311 ECH