Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0497 ATGGCCACCGTGATAGGTGAGGAGGAAGACAAGAAGGAGCACGCCAAAACACTCATCTGCGCCCTCAATCTCCTCTCACGCGACCTCCCTCTTCCCTCTCACCTCCTCACCTCCGTCTCTTCAATCTACCACAACAACCACCACGATGATGTAGGGGATTCTGGAGAAGGTTTAATTGCAGATCTTGAAGATGCTGTGTTGAATCAGCGGCTGAGTCGTGTGTCAGGTTCCAAATTGGAGGAAGCGAGGGGAAACCGGTATCAAACTCAGATTCAAAACCGGTTGAACCAGCTTCAAGAATTGCCTTCAAGCAGGGGAGATGACCTGCAGTCGAAGTGCCTGCTTGAATATTATGGACTAAAGCTAGCAGAGTTGCAGTCAAAGGTTCGATCTGATGTGAGTGCTGAAAACTGGCTAAATGTTAAATGTGCATATCCTGACAGGCAATTGTTTGACTGGGGCATGATGAGATTGCGCCGTCCACTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAAAAAGAAACGGGATGTTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAACCATATAGAAACTAGAAAAAGGAAATTTTTTGCAGAAGTACTTGATACTGTCCGTGATTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGCATCCAGGCATGGCATGGAAGGCAAAGACAACGAGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGACGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTACGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAACATTTAGATGGTATTGAACCCTTGGAAGAGTCCGAAGCTGATTTGCCTGAGTCAGATGCTTCAAAGAATGGGGTTTCTAAGGAATCACCTCTAGATGAAGAGATAGATTCCGATCATAATGGTGATTCTAGAGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACACTCGATTCAGGAAAAAATCACTGAGCAACCGTCTATACTTCAAGGTGGGGAATTAAGACAATACCAGATAGAGGGGCTCCAATGGATGATTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACAATTTCGCTTATAGCACATCTTCTGGAATACAAGGGTGTAACTGGTCCACACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATGAGTGAATTCTCAACATGGGTTCCTAGCATTACTACTGTTCTTTACGATGGAAGGCTGGAAGAAAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGGAAATTTAATGTTCTTATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCGCTACTTGATTGTGGATGAAGGGCACCGATTGAAGAATCATGAGTCTGCTCTAGCAAGAACCTTGGACTCTGGCTATCACATTCAACGAAGACTTCTTTTGACTGGTACCCCAATTCAGAACAATTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTTTAACAGATGAAGAACAGCTATTGATCATCCGGCGTCTGCATCAAGTGATAAGGCCCTTCATCTTAAGAAGGAAAAAGGACGAGGTAGAAAAATGTCTTCCTGAGAAATCTCAGGTCATACTCAAATGTGATATGTCCGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTGTTGCAACCATCCCTACCTCTTTGTGGGAGATTATGATATGTATAAACGTAAGGAGATTGTCAGAGCATCGGGTAAGTTTGAACTTCTAGACCGTTTGCTACCAAAACTTCGCAGAGCTGGACACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACGTTCTTGAAATTTATTTGCGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACAGAGGAAAGAGGCACTCTGCTAAAGAAATTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCGGGGGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGTGATTGGAACCCGCAAATGGATCAACAAGCAGAGGACCGAGCACATCGCATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTCTTGGTTAGTGTGGGATCAATAGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACTACTTCAACAGCTCAGGACAGGAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTTCAAGGGCGCTTGGGAATGATGTGCCCAGTGAGAGAGAAATTAACCGGCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGGCAAGAGGAAAATTACAGATCTCGTCTGATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCACTTAATAAGGATGATAAGGCCAAAGAGTTCAACGCTAGTGTTACTGGAAAGCGGAAAAGGAAAGAAGTGGTATATGCAGACACATTGAGTGATCTACAATGGATGAAGGCTGTGGAGAATGGGGAAGACATGGCAAGGCTTTCAGGTAGAGGGAAAAGAAGAGACCGCGTCTCATCTGACAGCATTGCACAAGCCAGTGATAATGCGGTGGCGGAAGAAAGTTTACTATATAGAGCTGAAAGTGCTTCCATGGCAAGCGAAAGAACAAGTGAAGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAGATTCAAGCCTGAAGGAACAAATTTCCAGAGACATGCGTACGAGGATGTCAGAGGAAGTGGTTTAAACCAGCATCTGTTATCCTGGAATACTCACAGGAAGAAGAGATCAAACTTTCCTGGGCCGGGTTCATCATCCGATTCTAGAGGGCAAAGTTCAAACGGAAAAGCAAACTGGAACTGA 3240 0.4281 MATVIGEEEDKKEHAKTLICALNLLSRDLPLPSHLLTSVSSIYHNNHHDDVGDSGEGLIADLEDAVLNQRLSRVSGSKLEEARGNRYQTQIQNRLNQLQELPSSRGDDLQSKCLLEYYGLKLAELQSKVRSDVSAENWLNVKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLKKKRDVERLSRLEEVEKNHIETRKRKFFAEVLDTVRDFQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDNKHLDGIEPLEESEADLPESDASKNGVSKESPLDEEIDSDHNGDSRDLLEGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSEREINRLAARSDEEFWLFEKMDEERRQEENYRSRLMEEHELPDWVYSPLNKDDKAKEFNASVTGKRKRKEVVYADTLSDLQWMKAVENGEDMARLSGRGKRRDRVSSDSIAQASDNAVAEESLLYRAESASMASERTSEEDSFHVTPASKRFKPEGTNFQRHAYEDVRGSGLNQHLLSWNTHRKKRSNFPGPGSSSDSRGQSSNGKANWN* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0497 1079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Lja5g0497 1079 Pfam Helicase conserved C-terminal domain 686 799 IPR001650 -
Lja5g0497 1079 PANTHER SNF2/RAD54 HELICASE FAMILY 13 1017 - -
Lja5g0497 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 601 IPR027417 -
Lja5g0497 1079 SMART helicmild6 715 799 IPR001650 -
Lja5g0497 1079 Gene3D - 607 906 IPR027417 -
Lja5g0497 1079 SMART ultradead3 372 565 IPR014001 -
Lja5g0497 1079 MobiDBLite consensus disorder prediction 999 1026 - -
Lja5g0497 1079 MobiDBLite consensus disorder prediction 1050 1079 - -
Lja5g0497 1079 Coils Coil 887 907 - -
Lja5g0497 1079 MobiDBLite consensus disorder prediction 963 982 - -
Lja5g0497 1079 MobiDBLite consensus disorder prediction 963 977 - -
Lja5g0497 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 854 IPR027417 -
Lja5g0497 1079 MobiDBLite consensus disorder prediction 326 346 - -
Lja5g0497 1079 Gene3D - 345 600 IPR038718 -
Lja5g0497 1079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 856 IPR001650 -
Lja5g0497 1079 SMART SnAC_2 892 952 IPR029295 GO:0042393
Lja5g0497 1079 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
Lja5g0497 1079 MobiDBLite consensus disorder prediction 309 346 - -
Lja5g0497 1079 Pfam Snf2-ATP coupling, chromatin remodelling complex 893 952 IPR029295 GO:0042393
Lja5g0497 1079 MobiDBLite consensus disorder prediction 1002 1017 - -
Lja5g0497 1079 PANTHER ATP-DEPENDENT HELICASE BRM 13 1017 - -
Lja5g0497 1079 CDD SF2_C_SNF 678 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0497 Lja-Chr5 4331038 4338857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0497 682 827 RAD5 or RAD16-like Gene Family AT5G43530 38.000 2.54e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g0497 SNF2_N 8.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0497 - - gmx:100786280 1870.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0497 5 4331038 4338857 Lja5g0497 5 4331038 4338857 ECH